Results 11 to 20 of about 6,745,034 (280)

Finding long tandem repeats in long noisy reads. [PDF]

Bioinformatics, 2021
Long tandem repeat expansions of more than 1000 nt have been suggested to be associated with diseases, but remain largely unexplored in individual human genomes because read lengths have been too short.
Ichikawa, K., Morishita, S., Myers, E.
core   +4 more sources

Long reads: their purpose and place. [PDF]

Human Molecular Genetics, 2018
In recent years long-read technologies have moved from being a niche and specialist field to a point of relative maturity likely to feature frequently in the genomic landscape.
Sandhu, MS, Alexander J Mentzer, Pollard, MO, Deepti Gurdasani, Manjinder S Sandhu, Porter, T, Martin O Pollard, Mentzer, AJ, Mentzer, Alexander J., Gurdasani, D, Tarryn Porter   +10 more
core   +6 more sources

Resolving repeat families with long reads [PDF]

BMC Bioinformatics, 2019
Background Draft quality genomes for a multitude of organisms have become common due to the advancement of genome assemblers using long-read technologies with high error rates. Although current assemblies are substantially more contiguous than assemblies
Philipp Bongartz
doaj   +3 more sources

HairSplitter: haplotype assembly from long, noisy reads [PDF]

Peer Community Journal
Motivation: Long-read assemblers face challenges in discerning closely related viral or bacterial strains, often collapsing similar strains into a single sequence.
Faure, Roland, Lavenier, Dominique, Flot, Jean-François   +2 more
doaj   +2 more sources

CoLoRd: compressing long reads. [PDF]

Nat Methods, 2022
Abstract The costs of maintaining exabytes of data produced by sequencing experiments every year has become a major issue in today’s genomics. In spite of the increasing popularity of the third generation sequencing, the existing algorithms for compressing long reads exhibit minor advantage over general purpose gzip ...
Kokot M, Gudyś A, Li H, Deorowicz S.
europepmc   +4 more sources

Long Island Botanical Society newsletter

v.25:no.1 ...
Long Island Botanical Society.
core   +15 more sources

RoR: Read-over-Read for Long Document Machine Reading Comprehension [PDF]

Findings of the Association for Computational Linguistics: EMNLP 2021, 2021
Accepted as findings of ...
Jing Zhao, Junwei Bao 0001, Yifan Wang 0016, Yongwei Zhou, Youzheng Wu, Xiaodong He 0001, Bowen Zhou 0001   +6 more
openaire   +4 more sources

diBELLA [PDF]

Proceedings of the 48th International Conference on Parallel Processing, 2019
We present a parallel algorithm and scalable implementation for genome analysis, specifically the problem of finding overlaps and alignments for data from "third generation" long read sequencers. While long sequences of DNA offer enormous advantages for biological analysis and insight, current long read sequencing instruments have high error rates and ...
Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick   +4 more
openaire   +3 more sources

long-read-tools.org: an interactive catalogue of analysis methods for long-read sequencing data [PDF]

GigaScience, 2021
Abstract Background The data produced by long-read third-generation sequencers have unique characteristics compared to short-read sequencing data, often requiring tailored analysis tools for tasks ranging from quality control to downstream processing.
Shanika L Amarasinghe, Matthew E Ritchie, Quentin Gouil   +2 more
openaire   +3 more sources

Chloroplast genome draft assembly of Falcataria moluccana using hybrid sequencing technology

BMC Research Notes, 2023
Objectives Falcataria moluccana, known locally as Sengon, is a fast-growing legume tree that is commonly planted in community forests of Java Island, Indonesia. However, the plantations face attacks of Boktor stem borer (Xystrocera festiva) and gall-rust
Vilda Puji Dini Anita, Deden Derajat Matra, Ulfah Juniarti Siregar   +2 more
doaj   +1 more source