Results 81 to 90 of about 123,166 (168)

Bridging maternal effects and epitranscriptomics: A novel perspective in developmental biology

Developmental Dynamics, EarlyView.
Abstract Maternal effects, encompassing both genetic (maternally expressed gene products) and non‐genetic (maternal state) influences, are powerful determinants of offspring phenotype, yet their RNA‐level mechanisms remain incompletely resolved. In parallel, epitranscriptomics, an emerging field centered on chemical modifications to RNA, has revealed ...
Ehsan Pashay Ahi
wiley   +1 more source

Global m6A methylation and gene expression patterns in human microglial HMC3 cells infected with HIV-1

Heliyon, 2023
N6-methyladenosine (m6A) methylation of human immunodeficiency virus type 1 (HIV-1) RNA regulates viral replication, and the m6A of host RNA is affected by HIV-1 infection, but its global pattern and function are still unclear.
Qian Peng, Jialu Qiao, Weiling Li, Qiang You, Song Hu, Yuchen Liu, Wei Liu, Kanghong Hu, Binlian Sun   +8 more
doaj   +1 more source

Results of ChIP-Seq and DNase-Seq

, 2023
Results of ChIP-Seq and DNase-Seq for Cavendish banana ...
Xiuxiu Li (13880603)
core   +1 more source

Nanopore direct RNA sequencing and the epitranscriptome: Advances in mapping native RNA landscapes

iMeta, EarlyView.
Nanopore direct RNA sequencing advances transcriptomics by capturing full‐length transcripts and multiple RNA modifications; this review details its principles, workflows, tools, applications, challenges, and future research potential. Abstract Nanopore direct RNA sequencing (DRS) has transformed transcriptomics by enabling single‐molecule, long‐read ...
Tianyuan Zhang, Jia Li, Chao Tang, You Wu, Hao Wu, Xi‐Tong Zhu, Ziyang Luo, Hang Qin, Lishan Ding, Yu Zeng, Shiou Yih Lee, Xiaotao Shen, Shiwen Gao, Zhaoyang Tian, Qian Tang, Mian Li, Muhammad Tahir Ul Qamar, Yang Dong, Komivi Dossa, Yaxuan Zhang, Hu Chen, Sanqi An, Xiang Yu, Lu Chen, Dingjie Wang, Shengli Li, Ling‐Ling Chen, Yanqiang Li   +27 more
wiley   +1 more source

ChIP-seq Analysis in R (CSAR): An R package for the statistical detection of protein-bound genomic regions

, 2011
Background In vivo detection of protein-bound genomic regions can be achieved by combining chromatin-immunoprecipitation with next-generation sequencing technology (ChIP-seq). The large amount of sequence data produced by this method needs to be analyzed
Muino, J.M., Angenent, G.C., Krajewski Pawel, Angenent Gerco C, Roeland CHJ van Ham, Pawel Krajewski, Muiño Jose M, Ham, R.C.H.J., van, Kaufmann, K., van Ham Roeland CHJ, Jose M Muiño, Kaufmann Kerstin, van Ham, R.C.H.J., Krajewski, P., Kerstin Kaufmann, Gerco C Angenent   +15 more
core   +1 more source

Fat Mass and Obesity‐Associated Protein Contributes to Tumorigenesis and Drug Resistance of Diffuse Large B‐Cell Lymphoma by Suppressing N6‐Methyladenosine Methylation of Myc

The Kaohsiung Journal of Medical Sciences, EarlyView.
ABSTRACT Ibrutinib resistance remains a major obstacle in the treatment of diffuse large B‐cell lymphoma (DLBCL). Fat mass and obesity‐associated protein (FTO) has been implicated in drug resistance through its regulation of N6‐methyladenosine (m6A) modifications; however, whether FTO mediates ibrutinib resistance in DLBCL remains unclear.
Ting‐Ting Lu, Jin‐Hao Chen, Yan‐Fang Wang, Xiao Wu, Hui‐Yun Ni, Qiu‐Rong Zhang   +5 more
wiley   +1 more source

METTL14 Ameliorates Mitochondrial Dysfunction and Autophagy in Lens Epithelial Cells of Diabetic Cataracts via m6A Modification of RPL3

The Kaohsiung Journal of Medical Sciences, EarlyView.
ABSTRACT Diabetic cataracts are a leading cause of blindness, with lens epithelial cells (LECs) exhibiting mitochondrial dysfunction and autophagy inhibition under high glucose (HG) conditions. Methyltransferase‐like 14 (METTL14), an RNA methyltransferase, regulates N6‐methyladenosine (m6A) RNA modification; however, its role in modulating ...
Rui Li, Xue Wang, Wei Du, Qian Li, Hong‐Ping Cui   +4 more
wiley   +1 more source

Comprehensive Epitranscriptome Analysis from MeRIP-seq Data with exomePeak2

Genomics, Proteomics & Bioinformatics
Abstract As the most abundant internal RNA modification, N  6-methyladenosine (m6A) affects the fate of RNA through various mechanisms and regulates essential biological processes. In this study, we developed exomePeak2, a novel computational tool for the comprehensive analysis of the m6A epitranscriptome using data generated by ...
Jingxian Zhou, Zhen Wei, Di Zhen, Yue Wang, Jionglong Su, Frans Coenen, Guifang Jia, Daniel J Rigden, Jia Meng   +8 more
openaire   +1 more source

Vitamin D receptor ChIP-seq in primary CD4+ cells: relationship to serum 25-hydroxyvitamin D levels and autoimmune disease. [PDF]

, 2013
BACKGROUND: Vitamin D insufficiency has been implicated in autoimmunity. ChIP-seq experiments using immune cell lines have shown that vitamin D receptor (VDR) binding sites are enriched near regions of the genome associated with autoimmune diseases.
Heather Hanwell, Adam E Handel, Giulio Disanto, Gavin Giovannoni, Sandve, GK, Berlanga-Taylor, AJ, Geir K Sandve, Finn Drabløs, Disanto, Giulio, Drabløs, F, Handel, Adam, Giuseppe Gallone, George C Ebers, Ramagopalan, Sreeram V, Ebers, George, Drabløs, Finn, Drablos, F, Hanwell, Heather EC, Antonio J Berlanga-Taylor, Handel, Adam E, Sandve, Geir Kjetil, Ebers, Georg C, Ramagopalan, SV, Hanwell, H, Handel, AE, Price, RN, Sreeram V Ramagopalan, Gallone, G, Ebers, GC, Gallone, Anna, Giovannoni, Gavin, Berlanga-Taylor, Antonio, Giovannoni, G, Price, Richard, Disanto, G   +34 more
core   +1 more source

iakerman/SNS-seq: SNS-seq analysis pipeline

, 2023
SNS-seq analysis pipeline - please note that depending on your reads, some parameters might need changing. This is published in Akerman et al, Nature Communications, 2020.
Akerman Lab
core   +1 more source