Results 11 to 20 of about 282,038 (168)
Frontiers in Plant Science, 2021 Fatty acids in crop seeds are a major source for both vegetable oils and industrial applications. Genetic improvement of fatty acid composition and oil content is critical to meet the current and future demands of plant-based renewable seed oils ...
Mathieu Cloutier +9 more
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A network perspective on metabolic inconsistency [PDF]
BMC Systems Biology, 2012 Integrating gene expression profiles and metabolic pathways under different experimental conditions is essential for understanding the coherence of these two layers of cellular organization. The network character of metabolic systems can be instrumental in developing concepts of agreement between expression data and pathways.
Nikolaus Sonnenschein +7 more
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Stochastic Simulation of Cellular Metabolism
IEEE Access, 2020 Increased technological methods have enabled the investigation of biology at nanoscale levels. Such systems require the use of computational methods to comprehend the complex interactions that occur.
Emalie J. Clement +5 more
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Regularizing capacity of metabolic networks [PDF]
Physical Review E, 2007 Despite their topological complexity almost all functional properties of metabolic networks can be derived from steady-state dynamics. Indeed, many theoretical investigations (like flux-balance analysis) rely on extracting function from steady states. This leads to the interesting question, how metabolic networks avoid complex dynamics and maintain a ...
Marr, Carsten +2 more
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On deducing causality in metabolic networks [PDF]
BMC Bioinformatics, 2008 Metabolic networks present a complex interconnected structure, whose understanding is in general a non-trivial task. Several formal approaches have been developed to support the investigation of such networks. One of the relevant problems in this context is the comprehension of causality dependencies amongst the molecules involved in the metabolic ...
Chiara Bodei +2 more
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CoRR, 2018 The metabolism of cells is the most basic and important part of human function. Neural networks in deep learning stem from neuronal activity. It is self-evident that the significance of metabolize neuronal network(MetaNet) in model construction. In this study, we explore neuronal metabolism for shallow network from proliferation and autophagy two ...
Dan Dai +4 more
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Finding Supported Paths in Heterogeneous Networks
Algorithms, 2015 Subnetwork mining is an essential issue in the analysis of biological, social and communication networks. Recent applications require the simultaneous mining of several networks on the same or a similar vertex set.
Guillaume Fertin +3 more
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PLoS ONE, 2013 The experimental observations and numerical studies with dissipative metabolic networks have shown that cellular enzymatic activity self-organizes spontaneously leading to the emergence of a Systemic Metabolic Structure in the cell, characterized by a set of different enzymatic reactions always locked into active states (metabolic core) while the rest ...
Fuente, Ildefonso M. de la +3 more
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Designing Metabolic Division of Labor in Microbial Communities
mSystems, 2019 Microbes face a trade-off between being metabolically independent and relying on neighboring organisms for the supply of some essential metabolites. This balance of conflicting strategies affects microbial community structure and dynamics, with important
Meghan Thommes +4 more
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Network Reconstruction and Modelling Made Reproducible with moped
Metabolites, 2022 Mathematical modeling of metabolic networks is a powerful approach to investigate the underlying principles of metabolism and growth. Such approaches include, among others, differential-equation-based modeling of metabolic systems, constraint-based ...
Nima P. Saadat +2 more
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