Results 21 to 30 of about 297,984 (312)
Path finding methods accounting for stoichiometry in metabolic networks [PDF]
, 2011 Copyright © 2011 Pey et al.; licensee BioMed Central Ltd. This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution ...
Prada, J +11 more
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Finding Supported Paths in Heterogeneous Networks
Algorithms, 2015 Subnetwork mining is an essential issue in the analysis of biological, social and communication networks. Recent applications require the simultaneous mining of several networks on the same or a similar vertex set.
Guillaume Fertin +3 more
doaj +1 more source
PLoS ONE, 2013 The experimental observations and numerical studies with dissipative metabolic networks have shown that cellular enzymatic activity self-organizes spontaneously leading to the emergence of a Systemic Metabolic Structure in the cell, characterized by a set of different enzymatic reactions always locked into active states (metabolic core) while the rest ...
Fuente, Ildefonso M. de la +3 more
openaire +6 more sources
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms [PDF]
, 2008 Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A. Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms. NUCLEIC ACIDS RESEARCH.
Gilbert, David +9 more
core +2 more sources
Designing Metabolic Division of Labor in Microbial Communities
mSystems, 2019 Microbes face a trade-off between being metabolically independent and relying on neighboring organisms for the supply of some essential metabolites. This balance of conflicting strategies affects microbial community structure and dynamics, with important
Meghan Thommes +4 more
doaj +1 more source
Network Reconstruction and Modelling Made Reproducible with moped
Metabolites, 2022 Mathematical modeling of metabolic networks is a powerful approach to investigate the underlying principles of metabolism and growth. Such approaches include, among others, differential-equation-based modeling of metabolic systems, constraint-based ...
Nima P. Saadat +2 more
doaj +1 more source
Organising metabolic networks: cycles in flux distributions [PDF]
, 2009 Metabolic networks are among the most widely studied biological systems. The topology and interconnections of metabolic reactions have been well described for many species, but are not sufficient to understand how their activity is regulated in living ...
Kritz, Maurício Vieira +7 more
core +2 more sources
Evolution of C4 photosynthesis predicted by constraint-based modelling
eLife, 2019 Constraint-based modelling (CBM) is a powerful tool for the analysis of evolutionary trajectories. Evolution, especially evolution in the distant past, is not easily accessible to laboratory experimentation.
Mary-Ann Blätke, Andrea Bräutigam
doaj +1 more source
Reaction Motifs in Metabolic Networks [PDF]
, 2005 The classic view of metabolism as a collection of metabolic pathways is being questioned with the currently available possibility of studying whole networks. Novel ways of decomposing the network into modules and motifs that could be considered as the building blocks of a network are being suggested. In this work, we introduce a new definition of motif
Vincent Lacroix +2 more
openaire +3 more sources
Structure, Properties, and Function of Glycosomes in Trypanosoma cruzi
Frontiers in Cellular and Infection Microbiology, 2020 Glycosomes are peroxisome-related organelles that have been identified in kinetoplastids and diplonemids. The hallmark of glycosomes is their harboring of the majority of the glycolytic enzymes.
Wilfredo Quiñones +5 more
doaj +1 more source