Results 51 to 60 of about 345,747 (340)

A genome scale metabolic network for rice and accompanying analysis of tryptophan, auxin and serotonin biosynthesis regulation under biotic stress [PDF]

open access: yes, 2013
Background Functional annotations of large plant genome projects mostly provide information on gene function and gene families based on the presence of protein domains and gene homology, but not necessarily in association with gene expression or ...
Amarasinghe, V.   +8 more
core   +2 more sources

Predicting networking couples for metabolic pathways of Arabidopsis [PDF]

open access: yes, 2006
EXCLI Journal ; Vol.
Cai, Yu-Dong   +2 more
openaire   +2 more sources

Flux-based classification of reactions reveals a functional bow-tie organization of complex metabolic networks

open access: yes, 2012
Unraveling the structure of complex biological networks and relating it to their functional role is an important task in systems biology. Here we attempt to characterize the functional organization of the large-scale metabolic networks of three ...
Giri, Varun   +5 more
core   +3 more sources

Organellar carbon metabolism is co-ordinated with distinct developmental phases of secondary xylem [PDF]

open access: yes, 2019
Subcellular compartmentation of plant biosynthetic pathways in the mitochondria and plastids requires coordinated regulation of nuclear encoded genes, and the role of these genes has been largely ignored by wood researchers. In this study, we constructed
Fierro Gutierrez, Ana Carolina Elisa   +4 more
core   +2 more sources

Quantitative proteomic characterization of human sperm cryopreservation: using data-independent acquisition mass spectrometry

open access: yesBMC Urology, 2019
Background Human sperm cryopreservation is a simple and effective approach for male fertility preservation. Methods To identify potential proteomic changes in this process, data-independent acquisition (DIA), a technology with high quantitative accuracy ...
Longlong Fu   +11 more
doaj   +1 more source

Mathematical problems for complex networks [PDF]

open access: yes, 2012
Copyright @ 2012 Zidong Wang et al. This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited ...
Liang, J, Liu, Y, Wang, Z
core   +2 more sources

A text-mining system for extracting metabolic reactions from full-text articles [PDF]

open access: yes, 2012
Background: Increasingly biological text mining research is focusing on the extraction of complex relationships relevant to the construction and curation of biological networks and pathways. However, one important category of pathway—metabolic pathways—
Czarnecki, Jan M.   +3 more
core   +2 more sources

On Algebraic Properties of Extreme Pathways in Metabolic Networks

open access: yesJournal of Computational Biology, 2010
We give a concise development of some of the major algebraic properties of extreme pathways (pathways that cannot be the result of combining other pathways) of metabolic networks, contrasting them to those of elementary flux modes (pathways involving a minimal set of reactions). In particular, we show that an extreme pathway can be recognized by a rank
Friedrich Srienc   +3 more
openaire   +3 more sources

The global integrative network: integration of signaling and metabolic pathways

open access: yesaBIOTECH, 2022
Abstract The crosstalk between signaling and metabolic pathways has been known to play key roles in human diseases and plant biological processes. The integration of signaling and metabolic pathways can provide an essential reference framework for crosstalk analysis.
Yuying Lin   +4 more
openaire   +2 more sources

Cancer metabolism: a modeling perspective

open access: yesFrontiers in Physiology, 2015
Tumor cells alter their metabolism to maintain unregulated cellular proliferation and survival, but this transformation leaves them reliant on constant supply of nutrients and energy.
Pouyan eGhaffari Nouran   +5 more
doaj   +1 more source

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