Results 31 to 40 of about 280,333 (306)

Design of microsatellite markers for Schizophyllum commune (Agaricales, Basidiomycota) based on analysis of its genome

Ukrainian Botanical Journal, 2022
Simple sequence repeats of DNA (SSRs) are the most popular source of genetic markers used in population genetics, phylogenetics, and genetic mapping. A large number of nucleotide repeats enriched in G and C were identified. 336 mononucleotide motifs with
Boiko S.M.
doaj   +1 more source

Diversity, genetic mapping, and signatures of domestication in the carrot (Daucus carota L.) genome, as revealed by Diversity Arrays Technology (DArT) markers [PDF]

, 2013
Carrot is one of the most economically important vegetables worldwide, but genetic and genomic resources supporting carrot breeding remain limited. We developed a Diversity Arrays Technology (DArT) platform for wild and cultivated carrot and used it to ...
Senalik, Douglas A., Iorizzo, Massimo, Allender, Charlotte J., Ellison, Shelby L., Heller-Uszynska, Kasia, Baranski, Rafal, Grzebelus, Dariusz, Dariusz Grzebelus, Kasia Heller-Uszynska, Douglas Senalik, Cavagnaro, Pablo, Alicja Macko-Podgorni, Allender, Charlotte, Cavagnaro, Pablo Federico, Simon, P. W. (Philipp W.), Nothnagel, Thomas, Simon, Philipp W., Pablo Cavagnaro, Rafal Baranski, Heller Uszynska, Kasia, Kilian, Andrzej, Philipp W. Simon, Shelby Ellison, Ellison, Shelby, Macko Podgorni, Alicja, Charlotte Allender, Andrzej Kilian, Massimo Iorizzo, Macko-Podgorni, Alicja, Thomas Nothnagel, Senalik, Douglas   +30 more
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Mapping statistics for nucleotide sequences for inspiratory preBötzinger complex neurons in neonatal mice (GEO:GSE175643)

, 2022
This spreadsheet describes the mapping statistics for nucleotide sequences from inspiratory preBötzinger complex neurons in data set GEO:GSE175643.
Caroline David (13103565), Gregory Conradi Smith (13103577), Margaret Saha (698558), Yae Sugimura (13103568), Prajkta Kallurkar (13103571), Maria Picardo (13103574), Christopher Del Negro (13103580)   +6 more
core   +1 more source

Transcriptome-wide mapping reveals a diverse dihydrouridine landscape including mRNA

PLoS Biology, 2022
Dihydrouridine is a modified nucleotide universally present in tRNAs, but the complete dihydrouridine landscape is unknown in any organism. We introduce dihydrouridine sequencing (D-seq) for transcriptome-wide mapping of D with single-nucleotide ...
Austin S. Draycott, Cassandra Schaening-Burgos, Maria F. Rojas-Duran, Loren Wilson, Leonard Schärfen, Karla M. Neugebauer, Sigrid Nachtergaele, Wendy V. Gilbert   +7 more
doaj  

LORSEN: Fast and Efficient eQTL Mapping With Low Rank Penalized Regression

Frontiers in Genetics, 2021
Characterization of genetic variations that are associated with gene expression levels is essential to understand cellular mechanisms that underline human complex traits.
Cheng Gao, Hairong Wei, Kui Zhang
doaj   +1 more source

Quantifying single nucleotide variant detection sensitivity in exome sequencing [PDF]

, 2013
BACKGROUND: The targeted capture and sequencing of genomic regions has rapidlydemonstrated its utility in genetic studies. Inherent in this technology isconsiderable heterogeneity of target coverage and this is expected tosystematically impact our ...
Taylor, Martin S.; id_orcid, Andrew P Jackson, Alison M Meynert, Jackson, Andrew, Bicknell, Louise, Martin S Taylor, Matthew E Hurles, Meynert, Alison, Louise S Bicknell   +8 more
core   +1 more source

Quantification of experimentally induced nucleotide conversions in high-throughput sequencing datasets

BMC Bioinformatics, 2019
Background Methods to read out naturally occurring or experimentally introduced nucleic acid modifications are emerging as powerful tools to study dynamic cellular processes.
Tobias Neumann, Veronika A. Herzog, Matthias Muhar, Arndt von Haeseler, Johannes Zuber, Stefan L. Ameres, Philipp Rescheneder   +6 more
doaj   +1 more source

A quantitative map of nucleotide substitution rates in bacterial rRNA [PDF]

Nucleic Acids Research, 1996
A recently developed method for estimating the variability of nucleotide sites in a sequence alignment [Van de Peer, Y., Van der Auwera, G. and De Wachter, R. (1996) J. Mol. Evol. 42, 201-210] was applied to bacterial 16S, 5S and 23S rRNAs. In this method, the variability of each nucleotide site is defined as its evolutionary rate relative to the ...
Van de Peer, Yves, Chapelle, Sabine, De Wachter, Rupert   +2 more
openaire   +3 more sources

Use of Denaturing HPLC to Map Human and Murine Genes and to Validate Single-Nucleotide Polymorphisms

BioTechniques, 2000
Linkage mapping has been extensively applied in the murine and human genomes. It remains a powerful approach to mapping genes and identifying genetic variants.
Lynn M. Schriml, Raymond J. Peterson, Bernard Gerrard, Michael Dean   +3 more
doaj   +1 more source

A pipeline for high throughput detection and mapping of SNPs from EST databases

, 2010
Single nucleotide polymorphisms (SNPs) represent the most abundant type of genetic variation that can be used as molecular markers. The SNPs that are hidden in sequence databases can be unlocked using bioinformatic tools.
C. Gerard van der Linden, Anithakumari, A.M., Jack A. M. Leunissen, Richard G. F. Visser, Eck, H.J., van, A. M. Anithakumari, van Eck, H.J., Vosman, B., Visser, R.G.F., Tang, Jifeng, Herman J. van Eck, Leunissen, J.A.M., van der Linden, C.G., Linden, C.G., van der, Jifeng Tang, Ben Vosman   +15 more
core   +1 more source