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From rules to foundation models: a comprehensive review of machine learning approaches for siRNA design. [PDF]
Khodagholi Z, Yousefi N.
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Canon enables causal inference of downstream genes in single-cell CRISPR studies via instrumental variable analysis. [PDF]
Wu P, Zhou X.
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Off-target effects and the solution
Nature Plants, 2019Adenine base editors (ABEs) and cytosine base editors (CBEs) are powerful tools for targeted base conversions, but their editing specificities are largely unknown. Now, two reports demonstrate that ABEs are highly specific, but BE3-type CBEs tend to generate genome-wide off-target single nucleotide variations.
Jintao, Tang +2 more
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Immunological off-target effects of imatinib
Nature Reviews Clinical Oncology, 2016Around 15 years ago, imatinib mesylate (Gleevec(®) or Glivec(®), Novartis, Switzerland) became the very first 'targeted' anticancer drug to be clinically approved. This drug constitutes the quintessential example of a successful precision medicine that has truly changed the fate of patients with Philadelphia-chromosome-positive chronic myeloid ...
Laurence Zitvogel +4 more
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Nature Chemical Biology, 2017
The 'off-targets' of a drug are often poorly characterized yet could be harnessed in the treatment of complex diseases. A recent study used a small-molecule screening in non-small-cell lung cancer to repurpose an FDA-approved ALK/IGF1R inhibitor and uncover its mechanism of action.
Gaye Saginc +2 more
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The 'off-targets' of a drug are often poorly characterized yet could be harnessed in the treatment of complex diseases. A recent study used a small-molecule screening in non-small-cell lung cancer to repurpose an FDA-approved ALK/IGF1R inhibitor and uncover its mechanism of action.
Gaye Saginc +2 more
openaire +1 more source
The Off-Target Effects of Torcetrapib
Endocrinology, 2009Cholesterol ester transfer protein (CETP) is responsible for the transfer of lipid from high-density lipoprotein (HDL; so-called good cholesterol) to low-density lipoprotein (LDL; socalled bad cholesterol). From a number of epidemiological studies, there is wide assent that subjects with high HDL are relatively protected in terms of cardiovascular risk,
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Designing effective siRNAs with off-target control
Biochemical and Biophysical Research Communications, 2004Successful gene silencing by RNA interference requires a potent and specific depletion of the target mRNA. Target candidates must be chosen so that their corresponding short interfering RNAs are likely to be effective against that target and unlikely to accidentally silence other transcripts due to sequence similarity.
Ola, Snøve +6 more
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Caveat of RNAi in Plants: The Off-Target Effect
2011RNA interference (RNAi), mediated by short interfering RNAs (siRNAs), is one of the widely used functional genomics method for suppressing the gene expression in plants. Initially, gene silencing by RNAi mechanism was believed to be specific requiring sequence homology between siRNA and target mRNA.
Muthappa, Senthil-Kumar +1 more
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