Results 111 to 120 of about 47,490 (285)

PacBio long-read sequencing v1

The barcoded library is also sequenced via PacBio long-read sequencing to associate variants with particular barcodes. This allows for the generation of a variant-barcode map along the length of the protein of interest, to which variant scores can be mapped.
Nicholas A. Popp, Melinda K. Wheelock, Raining Wang, Rachel L. Powell, Douglas M. Fowler   +4 more
openaire   +1 more source

First genome sequence of a European Alternaria brassicae isolate and genes involved in early development of alternaria leaf spot on Brassica juncea

Pest Management Science, EarlyView.
This article reports the first genome sequence of a UK Alternaria brassicae isolate. Dual RNA‐sequencing profiling of A. brassicae‐infected Brassica juncea leaves identified differentially expressed genes involved in pathogenicity and host response pathways in moderately resistant Sej‐2 (2) and moderately susceptible Pusa Jaikisan cultivars.
Kevin M. King, Graham McLaughlin, Chinthani S. Karandeni Dewage, Zedi Gao, David J. Hughes, Jonathan S. West, Henrik U. Stotz   +6 more
wiley   +1 more source

PacBio long read sequencing v1

, 2018

openaire   +1 more source

217 closed Salmonella reference genomes using PacBio sequencing

BMC Genomic Data
Abstract Objectives Whole Genome Sequencing (WGS) is widely used in food safety for the detection, investigation, and control of foodborne bacterial pathogens. However, the WGS data in most public databases, such as the National Center for Biotechnology Information (NCBI), primarily consist of Illumina short reads ...
Yan Luo, Jae Hee Jang, Maria Balkey, Maria Hoffmann   +3 more
openaire   +3 more sources

Complete Genomic Sequences of Three Salmonella enterica subsp. enterica Serovar Muenchen Strains from an Orchard in San Joaquin County, California. [PDF]

, 2020
We present here the complete genome sequences of three Salmonella enterica subsp. enterica serovar Muenchen strains, LG24, LG25, and LG26. All three strains were isolated from almond drupes grown in an orchard in San Joaquin County, California, in 2016 ...
Brown, Patrick H, Gorski, Lisa, Hnasko, Robert, Huynh, Steven, Khalsa, Sat Darshan S, McGarvey, Jeffery A, Parker, Craig T, Tran, Thao D   +7 more
core  

The contribution of wood‐inhabiting fungi and bacteria to dead wood decomposition varies along a regional climatic gradient

Functional Ecology, EarlyView.
Read the free Plain Language Summary for this article on the Journal blog. Abstract Dead wood decomposition is a crucial ecological function in forests, influenced by climate and facilitated by microbial communities. While fungi are considered the primary decomposers, bacteria also contribute, interacting with fungi in both facilitative and competitive
Anika Gossmann, Mo Bahram, Thomas Ranius, Kadri Runnel   +3 more
wiley   +1 more source

P146: Complete resolution of genes with highly homologous gene family members or pseudogenes using long-read PacBio HiFi sequencing*

Genetics in Medicine Open, 2023
Xiao Chen, Michael Eberle
doaj   +1 more source

The draft genome of Ditylenchus dipsaci

Journal of Nematology, 2019
Ditylenchus dipsaci is a devastating pest to many crops worldwide. We present the first genome sequence for this species, produced with PacBio sequencing and assembled with CANU.
Mimee Benjamin, Lord Etienne, Véronneau Pierre-Yves, Masonbrink Rick, Yu Qing, Akker Sebastian Eves-van den   +5 more
doaj   +1 more source

Comprehensive comparison of Pacific Biosciences and Oxford Nanopore Technologies and their applications to transcriptome analysis [version 2; referees: 2 approved]

F1000Research, 2017
Background: Given the demonstrated utility of Third Generation Sequencing [Pacific Biosciences (PacBio) and Oxford Nanopore Technologies (ONT)] long reads in many studies, a comprehensive analysis and comparison of their data quality and applications is ...
Jason L Weirather, Mariateresa de Cesare, Yunhao Wang, Paolo Piazza, Vittorio Sebastiano, Xiu-Jie Wang, David Buck, Kin Fai Au   +7 more
doaj   +1 more source

Soil Metagenome PacBio V2 v2

This protocol describes the sample collection to sequence acquisition workflow for PacBio Revio long-read sequencing of a complex soil sample using SMRT Bell library prep kit 2.0 and Revio SMRT cells.
Robert S James, Gaetan Benoit, sebastien raguideau, Georgina Alabone, Christopher Quince   +4 more
openaire   +1 more source