Results 71 to 80 of about 41,121 (277)

The complete mitochondrial genome of the tartar Sand Boa Eryx tataricus

Mitochondrial DNA. Part B. Resources, 2019
Eryx is a genus of snakes belonging to the family Boidae. In this study, the mitochondrial genome sequence of Eryx tataricus was generated using a PacBio RSII DNA sequencer employing the single molecule, real-time sequencing technology.
Xiuli Sun, Yaping Li, Jia Liu, Jun Sheng
doaj   +1 more source

Revealing the transcriptomic complexity of switchgrass by PacBio long-read sequencing [PDF]

Biotechnology for Biofuels, 2018
Switchgrass (Panicum virgatum L.) is an important bioenergy crop widely used for lignocellulosic research. While extensive transcriptomic analyses have been conducted on this species using short read-based sequencing techniques, very little has been reliably derived regarding alternatively spliced (AS) transcripts.We present an analysis of ...
Zuo, Chunman, Blow, Matthew, Sreedasyam, Avinash, Kuo, Rita C, Ramamoorthy, Govindarajan Kunde, Torres-Jerez, Ivone, Li, Guifen, Wang, Mei, Dilworth, David, Barry, Kerrie, Udvardi, Michael, Schmutz, Jeremy, Tang, Yuhong, Xu, Ying   +13 more
openaire   +5 more sources

A Multi-Tissue Transcriptomic Resource for the Brahminy Blindsnake <i>Indotyphlops braminus</i> (Squamata: Typhlopidae). [PDF]

Ecol Evol
We analyzed multi‐tissue expression patterns in the all‐female, parthenogenetic, and triploid Brahminy blindsnake (Indotyphlops braminus) using PacBio and Illumina RNA‐seq to better understand polyploidy and asexual reproduction in vertebrates. By characterizing differential expression and co‐expression networks across the ovary, heart, liver, skin ...
Sun K, Ji X, Lu J, Lu A, Wang Y, Zhu F.
europepmc   +2 more sources

PacBio metabarcoding of Fungi and other eukaryotes: errors, biases and perspectives [PDF]

New Phytologist, 2017
Summary Second‐generation, high‐throughput sequencing methods have greatly improved our understanding of the ecology of soil microorganisms, yet the short barcodes (< 500 bp) provide limited taxonomic and phylogenetic information for species discrimination and taxonomic assignment.
Leho, Tedersoo, Ave, Tooming-Klunderud, Sten, Anslan   +2 more
openaire   +2 more sources

Caracterización de las tecnologías de secuenciación genética de segunda y tercera generación

Tecnología en Marcha
El avance en la secuenciación de material genético ha favorecido el estudio de nuevas áreas de investigación relacionadas a la genómica, transcriptómica y demás ciencias -ómicas.
Dorian Rojas-Villalta, Daniela Benavides-Villegas, Belén Angulo-Hidalgo, Luis Muñoz-Solorzano, Chiara Consumi-Tubito   +4 more
doaj   +1 more source

Characterization of NAT2 Using Long‐Read Sequencing: Allele, Diplotype, and Phenotype Call Accuracy Compared to Other Testing Strategies

Clinical Pharmacology &Therapeutics, EarlyView.
The NAT2 pharmacogene is essential in drug metabolism, particularly for aromatic amines and hydrazines. Genetic variations in NAT2 categorize individuals as rapid, intermediate, or poor metabolizers based on their acetylation capacity to inform dosing guidelines.
Shobana John, Erin C. Boone, Byunggil Yoo, Laura B. Ramsey, Andrea Gaedigk   +4 more
wiley   +1 more source

Genome Improvement and Genetic Map Construction for Aethionema arabicum, the First Divergent Branch in the Brassicaceae Family

G3: Genes, Genomes, Genetics, 2019
The genus Aethionema is a sister-group to the core-group of the Brassicaceae family that includes Arabidopsis thaliana and the Brassica crops. Thus, Aethionema is phylogenetically well-placed for the investigation and understanding of genome and trait ...
Thu-Phuong Nguyen, Cornelia Mühlich, Setareh Mohammadin, Erik van den Bergh, Adrian E. Platts, Fabian B. Haas, Stefan A. Rensing, M. Eric Schranz   +7 more
doaj   +1 more source

SMRT-based mitochondrial genome of the edible mushroom Morchella conica

Mitochondrial DNA. Part B. Resources, 2020
Morchella conica Pers. is a highly-prized mushroom for its edible and medical values. In this study, we determined the complete mitochondrial genome of M. conica combining both PacBio and Illumina sequencing technologies.
Wei Li, Fen Zhang, Li-zhi Gao
doaj   +1 more source

Improving genetic diagnosis of hereditary tumor syndromes: From expanded gene panels to functional genomics

International Journal of Cancer, EarlyView.
Abstract Genetic tumor risk syndromes (genturis) contribute substantially to the overall cancer burden and provide opportunities for early detection, prevention, and individualized treatment. Yet, many affected individuals remain undiagnosed due to restrictive testing criteria and challenges in variant interpretation.
Mayra Sauer, Morghan C. Lucas, Vitus Prokosch, Thomas Keßler, Thomas Risch, Andreas Laner, Jan Henkel, Anna Benet‐Pagès, Ariane Hallermayr, Verena Steinke‐Lange, Elke Holinski‐Feder, Barbara Klink   +11 more
wiley   +1 more source

Applications and Trends of Machine Learning in Genomics and Phenomics for Next-Generation Breeding

Plants, 2019
Crops are the major source of food supply and raw materials for the processing industry. A balance between crop production and food consumption is continually threatened by plant diseases and adverse environmental conditions. This leads to serious losses
Salvatore Esposito, Domenico Carputo, Teodoro Cardi, Pasquale Tripodi   +3 more
doaj   +1 more source