Results 1 to 10 of about 2,963 (216)

Viral phylodynamics.

PLoS Computational Biology, 2013
Viral phylodynamics is defined as the study of how epidemiological, immunological, and evolutionary processes act and potentially interact to shape viralphylogenies.
Erik M Volz, Katia Koelle, Trevor Bedford   +2 more
doaj   +6 more sources

Phylodynamics Analysis of HIV Epidemic History in Belarus in 1987–2022 [PDF]

Frontiers in Epidemiology
This paper presents the first systematic molecular epidemiology study of the HIV epidemic in Belarus, an Eastern European country that, like much of Eastern Europe and including the Post-Soviet region, has been largely understudied in relation to HIV ...
Yuriy Gankin, Pavel Skums, Alina Nemira
exaly   +4 more sources

Recent advances in computational phylodynamics [PDF]

Current Opinion in Virology, 2018
Time-stamped, trait-annotated phylogenetic trees built from virus genome data are increasingly used for outbreak investigation and monitoring ongoing epidemics.
Baele, Guy, Lemey, Philippe, Suchard, Marc A., Vrancken, Bram, Dellicour, Simon, Suchard, Marc A   +5 more
core   +4 more sources

Phylodynamics on local sexual contact networks. [PDF]

PLOS Computational Biology, 2017
Phylodynamic models are widely used in infectious disease epidemiology to infer the dynamics and structure of pathogen populations. However, these models generally assume that individual hosts contact one another at random, ignoring the fact that many ...
David A. Rasmussen, Tanja Stadler, Huldrych F. Günthard, Günthard, Huldrych F., Kouyos, R., Stadler, Tanja; id_orcid, Stadler, T., Kouyos, Roger, Roger Kouyos, Rasmussen, David A., Rasmussen, D.A., Günthard, H.F., David A Rasmussen, Huldrych F Günthard, Rasmussen, David A; https://orcid.org/, Kouyos, Roger; https://orcid.org/, Günthard, Huldrych F, Stadler, Tanja, Rasmussen DA, Kouyos R, Günthard HF, Stadler T   +21 more
core   +9 more sources

Phylodynamics and human-mediated dispersal of a zoonotic virus [PDF]

PLoS Pathogens, 2010
Understanding the role of humans in the dispersal of predominantly animal pathogens is essential for their control. We used newly developed Bayesian phylogeographic methods to unravel the dynamics and determinants of the spread of dog rabies virus (RABV)
Talbi Chiraz, Abdelatif Elbia, Nicholas Campiz, Hervé Bourhy, Morón, Sonia Vazquez, Talbi, Chiraz, Faouzi, A., Mehdi Elharrak, Philippe Lemey, Suchard, Marc A, Echevarría, Juan E, Campiz, N., Tatem, A.J., Bourhy, Herve, Suchard, Marc A., Tatem, Andrew J, Marc A. Suchard, Elbia Abdelatif, Campiz Nicholas, Holmes Edward C., Edward C Holmes, Faouzi Abdellah, Andrew J. Tatem, Andrew Rambaut, Lemey, Philippe, Elharrak, M., Sonia Vazquez Morón, Echevarria, Juan Emilio, Marc A Suchard, Vázquez-Morón, Sonia, Talbi, C., Andrew J Tatem, Lemey, P., Chiraz Talbi, Abdelatif, E., Abdellah Faouzi, Jalal, Nourlil, Juan E. Echevarría, Tatem Andrew J., Nourlil, J., Edward C. Holmes, Echevarria, Juan E., Vazquez Morón Sonia, Echevarría Juan E., Campiz, Nicholas, Abdelatif, Elbia, Suchard Marc A., Rambaut, A., Elharrak Mehdi, Nourlil, Jalal, Suchard, M.A., Echevarria, J.E., Rambaut Andrew, Holmes, E.C., Tatem, Andrew J., Faouzi, Abdellah, Elharrak, Mehdi, Rambaut, Andrew, Jalal Nourlil, Holmes, Edward C, Holmes, Edward C., Lemey Philippe, Bourhy Hervé, Nourlil Jalal, Bourhy, H., Vazquez Moron, Sonia, Juan E Echevarría, Vazquez Moron, S.   +67 more
core   +13 more sources

Statistical approaches to viral phylodynamics [PDF]

, 2019
The recent years have witnessed a rapid increase in the quantity and quality of genomic data collected from human and animal pathogens, viruses in particular.
Fagundes De Carvalho, Luiz Max
core   +2 more sources

Assessing the impact of Enhanced-Case-Finding on tuberculosis case notifications and transmission in The Gambia using epidemiological and phylodynamic approaches [PDF]

Open Research Europe
Background Most tuberculosis (TB) cases in The Gambia are notified in the Greater Banjul Area (GBA).
Florian Gehre, Francis Oko, Boatema Ofori-Anyinam, Conor J. Meehan, Etthel M. Windels, Ken Joof, Tutty Faal, Francis Mendy, Tijan Jobarteh, Ensa Gitteh, Abi Janet Riley, Binta Sarr-Kuyateh, Catherine Okoi, Edward Demba, William Dei-Alorse, Kodjovi Mlaga, Basil Sambou, Fatoumatta Kanuteh, Kodou Lette, Abdul Khalie Muhammad, Shadrac Agbla, Wim Mulders, Simon Donkor, David Jeffries, Anna Roca, Umberto D'Alessandro, Martin Antonio, Ifedayo Adetifa, Bouke De Jong   +28 more
doaj   +2 more sources

PhyloCNN: Improving Tree Representation and Neural Network Architecture for Deep Learning From Trees in Phylodynamics and Diversification Studies [PDF]

Systematic Biology
Manolo Fernandez Perez, Olivier Gascuel
exaly   +2 more sources

Molecular Detection of Southern Tomato Amalgavirus Prevalent in Tomatoes and Its Genomic Characterization with Global Evolutionary Dynamics

Viruses, 2022
Southern tomato amalgavirus (STV) is a cryptic pathogen that is abundant in tomato production fields and intensifies the resurgence of tomato yellow stunt disease (ToYSD), together with other phytoviruses.
Muhammad Dilshad Hussain, Tahir Farooq, Xi Chen, Tong Jiang, Lianyi Zang, Muhammad Taimoor Shakeel, Tao Zhou   +6 more
doaj   +1 more source

Phylodynamics of Alagoas vesiculovirus in Brazil

Brazilian Journal of Microbiology, 2022
The vesicular stomatitis virus belongs to the Rhabdoviridae family, genus Vesiculovirus. Four species (New Jersey, Indiana, Cocal, and Alagoas) are responsible for disease outbreaks in Western Hemisphere countries. In Brazil, the Alagoas virus is responsible for the main outbreaks of the disease, mainly in the states of the Northeast, Midwest, and ...
Antônio Augusto, Fonseca Júnior, Mateus, Laguardia-Nascimento, Aline Aparecida Silva, Barbosa, Valdenia Lopes, da Silva Gonçalves, Anapolino Macedo, de Oliveira, Anselmo Vasconcelos, Rivetti Júnior, Marcelo Fernandes, Camargos   +6 more
openaire   +2 more sources