Results 11 to 20 of about 2,869 (209)

Viral phylodynamics.

PLoS Computational Biology, 2013
Viral phylodynamics is defined as the study of how epidemiological, immunological, and evolutionary processes act and potentially interact to shape viralphylogenies.
Erik M Volz, Katia Koelle, Trevor Bedford   +2 more
doaj   +6 more sources

Recent advances in computational phylodynamics [PDF]

Current Opinion in Virology, 2018
Time-stamped, trait-annotated phylogenetic trees built from virus genome data are increasingly used for outbreak investigation and monitoring ongoing epidemics.
Baele, Guy, Lemey, Philippe, Suchard, Marc A., Vrancken, Bram, Dellicour, Simon, Suchard, Marc A   +5 more
core   +4 more sources

Phylodynamics on local sexual contact networks. [PDF]

PLOS Computational Biology, 2017
Phylodynamic models are widely used in infectious disease epidemiology to infer the dynamics and structure of pathogen populations. However, these models generally assume that individual hosts contact one another at random, ignoring the fact that many ...
David A. Rasmussen, Tanja Stadler, Huldrych F. Günthard, Günthard, Huldrych F., Kouyos, R., Stadler, Tanja; id_orcid, Stadler, T., Kouyos, Roger, Roger Kouyos, Rasmussen, David A., Rasmussen, D.A., Günthard, H.F., David A Rasmussen, Huldrych F Günthard   +13 more
core   +8 more sources

Phylodynamics and human-mediated dispersal of a zoonotic virus [PDF]

PLoS Pathogens, 2010
Understanding the role of humans in the dispersal of predominantly animal pathogens is essential for their control. We used newly developed Bayesian phylogeographic methods to unravel the dynamics and determinants of the spread of dog rabies virus (RABV)
Talbi Chiraz, Abdelatif Elbia, Nicholas Campiz, Hervé Bourhy, Morón, Sonia Vazquez, Talbi, Chiraz, Faouzi, A., Mehdi Elharrak, Philippe Lemey, Suchard, Marc A, Echevarría, Juan E, Campiz, N., Tatem, A.J., Bourhy, Herve, Suchard, Marc A., Tatem, Andrew J, Marc A. Suchard, Elbia Abdelatif, Campiz Nicholas, Holmes Edward C., Edward C Holmes, Faouzi Abdellah, Andrew J. Tatem, Andrew Rambaut, Lemey, Philippe, Elharrak, M., Sonia Vazquez Morón, Echevarria, Juan Emilio, Marc A Suchard, Vázquez-Morón, Sonia, Talbi, C., Andrew J Tatem, Lemey, P., Chiraz Talbi, Abdelatif, E., Abdellah Faouzi, Jalal, Nourlil, Juan E. Echevarría, Tatem Andrew J., Nourlil, J., Edward C. Holmes, Echevarria, Juan E., Vazquez Morón Sonia, Echevarría Juan E., Campiz, Nicholas, Abdelatif, Elbia, Suchard Marc A., Rambaut, A., Elharrak Mehdi, Nourlil, Jalal, Suchard, M.A., Echevarria, J.E., Rambaut Andrew, Holmes, E.C., Tatem, Andrew J., Faouzi, Abdellah, Elharrak, Mehdi, Rambaut, Andrew, Jalal Nourlil, Holmes, Edward C, Holmes, Edward C., Lemey Philippe, Bourhy Hervé, Nourlil Jalal, Bourhy, H., Vazquez Moron, Sonia, Juan E Echevarría, Vazquez Moron, S.   +67 more
core   +13 more sources

Statistical approaches to viral phylodynamics [PDF]

, 2019
The recent years have witnessed a rapid increase in the quantity and quality of genomic data collected from human and animal pathogens, viruses in particular.
Fagundes De Carvalho, Luiz Max
core   +5 more sources

Phylodynamics of deer tick virus in North America

Virus Evolution, 2023
The burden of ticks and the pathogens they carry is increasing worldwide. Powassan virus (POWV; Flaviviridae: ), the only known North American tick-borne flavivirus, is of particular concern due to rising cases and the severe morbidity of POWV ...
Bombin, Andrei, Ojeda, Erick, McMinn, Rebekah J, Langsjoen, Rose M, Goethert, Heidi K, Robich, Rebecca M, Lubelczyk, Charles B, Cosenza, Danielle, Smith, Robert   +8 more
core   +4 more sources

Comprehensive phylogeographic and phylodynamic analyses of global Senecavirus A

Frontiers in Microbiology, 2022
Senecavirus A (SVA) is a member of the genus Senecavirus in the family Picornaviridae that infects pigs and shows symptoms similar to foot and mouth diseases and other vesicular diseases. It is difficult to prevent, thus, causing tremendous economic loss
Han Gao, Han Gao, Han Gao, Han Gao, Yong-jie Chen, Yong-jie Chen, Yong-jie Chen, Yong-jie Chen, Xiu-qiong Xu, Zhi-ying Xu, Zhi-ying Xu, Zhi-ying Xu, Zhi-ying Xu, Si-jia Xu, Si-jia Xu, Si-jia Xu, Si-jia Xu, Jia-bao Xing, Jia-bao Xing, Jia-bao Xing, Jia-bao Xing, Jing Liu, Jing Liu, Jing Liu, Jing Liu, Yun-feng Zha, Yan-kuo Sun, Yan-kuo Sun, Yan-kuo Sun, Yan-kuo Sun, Gui-hong Zhang, Gui-hong Zhang, Gui-hong Zhang, Gui-hong Zhang   +33 more
doaj   +3 more sources

Phylodynamics of H5N1 avian influenza virus in Indonesia.

Molecular Ecology, 2012
Understanding how pathogens invade and become established in novel host populations is central to the ecology and evolution of infectious disease. Influenza viruses provide unique opportunities to study these processes in nature because of their rapid ...
Pybus, OG, Lemey, P, Li, J, Jiang, Jingwei, Shi, M, Lam, TT-Y, Jiang, J, Lam, TT, Lam, Tommy Tsan-Yuk, Leung, Frederick Chi-Ching, Leung, FC-C, Hon, Chung-Chau, Shi, Mang, Tun, Hein Min, Hon, C-C, Pybus, Oliver G., Holmes, Edward C., Li, Jun, Pybus, Oliver, Tun, HM, Leung, FC, Lemey, Philippe, Holmes, EC, Hon, CC, Lam, TTY, Leung, FCC   +25 more
core   +6 more sources

Phylodynamics of Alagoas vesiculovirus in Brazil

Brazilian Journal of Microbiology, 2022
The vesicular stomatitis virus belongs to the Rhabdoviridae family, genus Vesiculovirus. Four species (New Jersey, Indiana, Cocal, and Alagoas) are responsible for disease outbreaks in Western Hemisphere countries. In Brazil, the Alagoas virus is responsible for the main outbreaks of the disease, mainly in the states of the Northeast, Midwest, and ...
Antônio Augusto, Fonseca Júnior, Mateus, Laguardia-Nascimento, Aline Aparecida Silva, Barbosa, Valdenia Lopes, da Silva Gonçalves, Anapolino Macedo, de Oliveira, Anselmo Vasconcelos, Rivetti Júnior, Marcelo Fernandes, Camargos   +6 more
openaire   +2 more sources

Phylodynamics of Infectious Disease Epidemics [PDF]

Genetics, 2009
AbstractWe present a formalism for unifying the inference of population size from genetic sequences and mathematical models of infectious disease in populations. Virus phylogenies have been used in many recent studies to infer properties of epidemics. These approaches rely on coalescent models that may not be appropriate for infectious diseases.
Volz, Erik M., Pond, Sergei L. Kosakovsky, Ward, M. J., Leigh Brown, Andrew J., Frost, Simon D. W.   +4 more
openaire   +2 more sources