Results 11 to 20 of about 7,315 (162)

Phylogenomics

Annual Review of Ecology, Evolution, and Systematics, 2005
▪ Abstract  The continuous flow of genomic data is creating unprecedented opportunities for the reconstruction of molecular phylogenies. Access to whole-genome data means that phylogenetic analysis can now be performed at different genomic levels, such as primary sequences and gene order, allowing for reciprocal corroboration of the results.
Philippe, Hervé, Delsuc, Frédéric, Brinkmann, Henner, Lartillot, Nicolas   +3 more
openaire   +2 more sources

Berkeley Phylogenomics Group web servers: resources for structural phylogenomic analysis [PDF]

Nucleic Acids Research, 2007
Phylogenomic analysis addresses the limitations of function prediction based on annotation transfer, and has been shown to enable the highest accuracy in prediction of protein molecular function. The Berkeley Phylogenomics Group provides a series of web servers for phylogenomic analysis: classification of sequences to pre-computed families and ...
Glanville, Jake Gunn, Kirshner, Dan, Krishnamurthy, Nandini, Sjölander, Kimmen   +3 more
openaire   +2 more sources

Origin of subgenomes in the circumboreal, allopolyploid, carnivorous plant Drosera anglica

American Journal of Botany, EarlyView.
Abstract Premise The parentage of the widespread allopolyploid Drosera anglica, a member of the carnivorous sundew genus, remains uncertain despite over 100 years of morphological, cytological, and, more recently, molecular study. Methods Using transcriptomic and genomic data from 12 species of Drosera sect. Drosera, including four D.
Rebekah A. Mohn, Ya Yang
wiley   +1 more source

Detecting cryptic ghost lineage introgression in four‐taxon genomic datasets

Applications in Plant Sciences, EarlyView.
Abstract Premise Hybridization and introgression are pervasive evolutionary forces that have played fundamental roles in shaping the diversity of wild and domesticated plants. Four‐taxon tests for introgression provide a reliable framework for detecting signatures of ancient introgression from genomic data, which have played an important role in ...
Evan S. Forsythe, Blaine S. Pappa, Darren A. Clavette, Devin Y. Mendoza   +3 more
wiley   +1 more source

A New Era for Using Natural Pigments: The Case of the C50 Carotenoid Called Bacterioruberin

Biotechnology and Applied Biochemistry, EarlyView.
ABSTRACT Haloarchaea are extremophilic microorganisms belonging to the Archaea domain that require high salt concentrations to live, thus inhabiting ecosystems like salty ponds, salty marshes, or extremely salty lagoons. They are more abundant and widely distributed worldwide than initially expected.
Micaela Giani, Elena Valdés, José María Miralles‐Robledillo, Guillermo Martínez, Carmen Pire, Rosa María Martínez‐Espinosa   +5 more
wiley   +1 more source

Phylogenomics and Biogeography of the Eastern Asian–Eastern North American Disjunct Genus Hylodesmum (Fabaceae)

Biological Diversity, EarlyView.
Integrating data from plastid genomes, nrDNA, and 353 low‐copy nuclear genes, this study establishes a robust phylogenetic framework for Hylodesmum. This framework supports a taxonomic revision recognizing 18 species and reveals a complex pattern of bidirectional EA–ENA dispersal, with mammals as a plausible dispersal agent. ABSTRACT Phylogenomics with
Zhuqiu Song, Gang Yao, Chen Ren, Kaiwen Jiang, Dongxian Xu, Shijin Li   +5 more
wiley   +1 more source

Post‐LECA Origin and Diversification of an Axonemal Outer Arm Dynein Motor

Cytoskeleton, EarlyView.
ABSTRACT Dyneins were present in the last eukaryotic common ancestor (LECA) and play key roles in eukaryotic biology. Axonemal dyneins form the inner and outer arms that power ciliary beating, and it has long been recognized that outer arms in some organisms contain two different heavy chain motors, whereas those from other species contain a third unit
Stephen M. King
wiley   +1 more source

Clarifying nomenclatural uncertainties in Jupunba (Caesalpinioideae, Leguminosae)

Nordic Journal of Botany, EarlyView.
Molecular phylogenetic studies have prompted substantial revisions in the systematics of the former genus Abarema, resulting in the reinstatement of the genera Punjuba and Jupunba, and a re‐circumscription of Abarema. Despite these advances, some taxa still require nomenclatural adjustments to reflect monophyletic lineages.
Ethiéne Guerra, Marcos Vinicius Batista Soares, Marli Pires Morim, João Ricardo Vieira Iganci   +3 more
wiley   +1 more source

Proteome Analysis of Corynebacterium diphtheriae–Macrophage Interaction

PROTEOMICS, EarlyView.
ABSTRACT Contact of Corynebacterium diphtheriae with macrophages induces adaptations on both bacterial and cellular sides. The study presented here was aiming to shed light on the simultaneous intracellular adaptation of the bacteria and changes in the proteome of the phagocytes in response to the internalization of C. diphtheriae.
Luca Musella, Jens Möller, Christopher Lischer, Julio Vera‐Gonzalez, Jörg Hofmann, Lisa Ott, Andreas Burkovski   +6 more
wiley   +1 more source

Range‐wide sampling reveals cryptic lineages but largely conserved mycorrhizal associations in the Japanese fairy lantern Thismia kobensis

PLANTS, PEOPLE, PLANET, EarlyView.
The jewel‐like flowers of Thismia are as rare as they are beautiful, often recorded from only a single site per species. Access to 15 populations of T. kobensis has enabled an uncommon, range‐wide assessment of morphology, genetics, and fungal partners. Our analyses showed that T.
Kenji Suetsugu, Kazuma Takizawa, Kazuki Inui, Akihiro Nishimura, Shun K. Hirota   +4 more
wiley   +1 more source