Results 21 to 30 of about 16,041 (100)

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

open access: yesbioRxiv, 2017
Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly changing technologies and expanding data volumes make evaluation of completeness a challenging task. Technical sequencing quality metrics can be complemented by quantifying
Robert M. Waterhouse   +7 more
semanticscholar   +1 more source

MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

open access: yesbioRxiv, 2019
Thanks to the development of high-throughput sequencing technologies, target enrichment sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routinely inferring phylogenetic relationships from thousands of genomic markers. Recently, it has
R. Allio   +5 more
semanticscholar   +1 more source

Plant GATA Factors: Their Biology, Phylogeny, and Phylogenomics.

open access: yesAnnual Review of Plant Biology, 2022
GATA factors are evolutionarily conserved transcription factors that are found in animals, fungi, and plants. Compared to that of animals, the size of the plant GATA family is increased.
C. Schwechheimer   +2 more
semanticscholar   +1 more source

Phylogenomics, Origin and Diversification of Anthozoans (Phylum Cnidaria).

open access: yesSystematic Biology, 2021
Anthozoan cnidarians (corals and sea anemones) include some of the world's most important foundation species, capable of building massive reef complexes that support entire ecosystems.
C. McFadden   +8 more
semanticscholar   +1 more source

GToTree: a user-friendly workflow for phylogenomics

open access: yesbioRxiv, 2019
Summary Genome-level evolutionary inference (i.e., phylogenomics) is becoming an increasingly essential step in many biologists’ work - such as in the characterization of newly recovered genomes, or in leveraging available reference genomes to guide ...
Michael D. Lee
semanticscholar   +1 more source

Evidence for sponges as sister to all other animals from partitioned phylogenomics with mixture models and recoding

open access: yesNature Communications, 2021
Resolving the relationships between the major lineages in the animal tree of life is necessary to understand the origin and evolution of key animal traits.
Anthony K. Redmond, A. McLysaght
semanticscholar   +1 more source

One thousand plant transcriptomes and the phylogenomics of green plants

open access: yesNature, 2019
Green plants (Viridiplantae) include around 450,000–500,000 species1,2 of great diversity and have important roles in terrestrial and aquatic ecosystems.
James H. Michael S. Eric J. Michael K. Matthew A. Sean W Leebens-Mack Barker Carpenter Deyholos Gitzendanne   +194 more
semanticscholar   +1 more source

Anchored Phylogenomics, Evolution and Systematics of Elateridae: Are All Bioluminescent Elateroidea Derived Click Beetles?

open access: yesBiology, 2021
Simple Summary In the era of phylogenomics, new molecular sequencing and computational techniques can aid in resolving phylogenetic relationships that were previously intractable by morphological or limited molecular data. In this study, we used anchored
H. Douglas   +10 more
semanticscholar   +1 more source

Phylogenomics and Comparative Genomic Studies Robustly Support Division of the Genus Mycobacterium into an Emended Genus Mycobacterium and Four Novel Genera

open access: yesFrontiers in Microbiology, 2018
The genus Mycobacterium contains 188 species including several major human pathogens as well as numerous other environmental species. We report here comprehensive phylogenomics and comparative genomic analyses on 150 genomes of Mycobacterium species to ...
Radhey S. Gupta, Brian Lo, Jeen Son
semanticscholar   +1 more source

Phylogenomics and the rise of the angiosperms

open access: yesNature
Angiosperms are the cornerstone of most terrestrial ecosystems and human livelihoods1,2. A robust understanding of angiosperm evolution is required to explain their rise to ecological dominance.
A. Zuntini   +278 more
semanticscholar   +1 more source

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