Results 21 to 30 of about 45,343 (323)
Evolutionary Sparse Learning for phylogenomics [PDF]
Molecular Biology and Evolution, 2021 AbstractWe introduce a supervised machine learning approach with sparsity constraints for phylogenomics, referred to as evolutionary sparse learning (ESL). ESL builds models with genomic loci—such as genes, proteins, genomic segments, and positions—as parameters.
Sudhir Kumar, Sudip Sharma
openaire +3 more sources
Mitochondrial DNA. Part B. Resources, 2020 The complete mitochondrial genome of Protaetia brevitarsis, an important Scarabaeidae insect that is distributed across most Asian countries, was characterized using long template PCR methods.
Eun Hwa Choi +4 more
doaj +1 more source
The Mathematics of Phylogenomics [PDF]
, 2004 The grand challenges in biology today are being shaped by powerful high-throughput technologies that have revealed the genomes of many organisms, global expression patterns of genes and detailed information about variation within populations.
Pachter, Lior, Sturmfels, Bernd
core +6 more sources
Polyploidy breaks speciation barriers in Australian burrowing frogs Neobatrachus [PDF]
, 2020 Polyploidy has played an important role in evolution across the tree of life but it is still unclear how polyploid lineages may persist after their initial formation.
Booker, William +11 more
core +4 more sources
BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics
bioRxiv, 2017 Genomics promises comprehensive surveying of genomes and metagenomes, but rapidly changing technologies and expanding data volumes make evaluation of completeness a challenging task. Technical sequencing quality metrics can be complemented by quantifying
Robert M. Waterhouse +7 more
semanticscholar +1 more source
Phylogenomics and diversification of Sordariomycetes
Mycosphere, 2023 The Sordariomycetes is a specious, morphologically diverse, and widely distributed class of the phylum Ascomycota that forms a well-supported clade diverged from Leotiomycetes.
Yp P. Chen +3 more
semanticscholar +1 more source
EDGAR3.0: comparative genomics and phylogenomics on a scalable infrastructure
Nucleic Acids Res., 2021 The EDGAR platform, a web server providing databases of precomputed orthology data for thousands of microbial genomes, is one of the most established tools in the field of comparative genomics and phylogenomics.
M. Dieckmann +6 more
semanticscholar +1 more source
Phylogenomic analysis restructures the ulvophyceae [PDF]
Journal of Phycology, 2021 Here, we present new transcriptome sequencing data from seven species of Dasycladales (Ulvophyceae) and a phylogenomic analysis of the Chlorophyta with a particular focus on Ulvophyceae. We have focused on a broad selection of green algal groups and carefully selected genes suitable for reconstructing deep eukaryote evolutionary histories.
Øyvind Sætren Gulbrandsen +4 more
openaire +4 more sources
Mitochondrial DNA. Part B. Resources, 2021 A hen harrier Circus cyaneus (Accipitriformes: Accipitridae), a migrant raptor having a wide breeding range from Europe to Northeast Asia, migrates to more southerly areas (Southern Europe, China, Korea and Japan) in winter.
Eun Hwa Choi +7 more
doaj +1 more source
Comparative Phylogenomics of Pathogenic and Nonpathogenic Species. [PDF]
, 2015 The Ascomycete Onygenales order embraces a diverse group of mammalian pathogens, including the yeast-forming dimorphic fungal pathogens Histoplasma capsulatum, Paracoccidioides spp. and Blastomyces dermatitidis, the dermatophytes Microsporum spp.
Taylor, John W, Whiston, Emily
core +3 more sources