Results 1 to 10 of about 15,942 (254)

New plastome structural rearrangements discovered in core Tillandsioideae (Bromeliaceae) support recently adopted taxonomy

Frontiers in Plant Science, 2022
Full plastome sequences for land plants have become readily accessible thanks to the development of Next Generation Sequencing (NGS) techniques and powerful bioinformatic tools. Despite this vast amount of genomic data, some lineages remain understudied.
Sandra I. Vera-Paz, Sandra I. Vera-Paz, Daniel D. Díaz Contreras Díaz, Daniel D. Díaz Contreras Díaz, Matthias Jost, Stefan Wanke, Stefan Wanke, Andrés J. Rossado, Rebeca Hernández-Gutiérrez, Rebeca Hernández-Gutiérrez, Gerardo A. Salazar, Susana Magallón, Eric J. Gouda, Ivón M. Ramírez-Morillo, Sabina Donadío, Carolina Granados Mendoza, Carolina Granados Mendoza   +16 more
doaj   +3 more sources

Progress, challenge and prospect of plant plastome annotation

Frontiers in Plant Science, 2023
The plastome (plastid genome) represents an indispensable molecular data source for studying phylogeny and evolution in plants. Although the plastome size is much smaller than that of nuclear genome, and multiple plastome annotation tools have been ...
Xiao-Jian Qu, Dan Zou, Rui-Yu Zhang, Gregory W. Stull, Gregory W. Stull, Ting-Shuang Yi, Ting-Shuang Yi   +6 more
doaj   +2 more sources

Plastome-based phylogeny and biogeography of Lactuca L. (Asteraceae) support revised lettuce gene pool categories

Frontiers in Plant Science, 2022
This study generated and analyzed complete plastome and internal transcribed spacer (ITS) data of 46 Lactuca species, 13 African endemic (AE) Lactuca species, and 15 species from eight related genera in Lactucinae.
Ran Chu, Xuemin Xu, Zhenwei Lu, Yonggui Ma, Han Cheng, Shixin Zhu, Freek T. Bakker, M. Eric Schranz, Zhen Wei   +8 more
openalex   +2 more sources

Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae) [PDF]

BMC Plant Biology, 2023
Background The cactus family (Cactaceae) has been reported to have evolved a minimal photosynthetic plastome size, with the loss of inverted-repeat (IR) regions and NDH gene suites.
Jie Yu, Jingling Li, Youwei Zuo, Qiulin Qin, Siyuan Zeng, Heinz Rennenberg, Hongping Deng   +6 more
openalex   +2 more sources

Resolution, conflict and rate shifts: insights from a densely sampled plastome phylogeny for Rhododendron (Ericaceae)

Annals of Botany, 2022
Background and Aims Rhododendron is a species-rich and taxonomically challenging genus due to recent adaptive radiation and frequent hybridization. A well-resolved phylogenetic tree would help to understand the diverse history of Rhododendron in the ...
Zhi‐Qiong Mo, Chao‐Nan Fu, Ming‐Shu Zhu, Richard I. Milne, Junbo Yang, Jie Cai, Han‐Tao Qin, Wei Zheng, Peter M. Hollingsworth, Li D, Lian‐Ming Gao   +10 more
openalex   +2 more sources

Comparative and phylogenetic analyses of Loranthaceae plastomes provide insights into the evolutionary trajectories of plastome degradation in hemiparasitic plants

BMC Plant Biology
Background The lifestyle transition from autotrophy to heterotrophy often leads to extensive degradation of plastomes in parasitic plants, while the evolutionary trajectories of plastome degradation associated with parasitism in hemiparasitic plants ...
Lilei Tang, Tinglu Wang, Luxiao Hou, Guangfei Zhang, Min Deng, Xiaorong Guo, Yunheng Ji   +6 more
doaj   +2 more sources

The complete plastome of the Antarctic moss Andreaea regularis (Andreaeaceae) and its comparative analyses within Bryophyta [PDF]

BMC Genomics
Background Andreaeopsida represents a distinct group of nonperistomate mosses, characterized by its phylogenetic position as a sister to peristomate species.
Syahril Sulaiman, Hyodong Lee, Kyungwon Min, Jungeun Lee, Young-Jun Yoon, Jun Hyuck Lee, Hyoungseok Lee   +6 more
doaj   +2 more sources

Evolutionary differences in gene loss and pseudogenization among mycoheterotrophic orchids in the tribe Vanilleae (subfamily Vanilloideae)

Frontiers in Plant Science, 2023
IntroductionGaleola lindleyana is a mycoheterotrophic orchid belonging to the tribe Vanilleae within the subfamily Vanilloideae.MethodsIn this study, the G.
Lisi Zhou, Tongyao Chen, Xiandan Qiu, Jinxin Liu, Shunxing Guo   +4 more
doaj   +1 more source

Genome-scale angiosperm phylogenies based on nuclear, plastome, and mitochondrial datasets.

Journal of Integrative Plant Biology, 2023
Angiosperms dominate the Earth's ecosystems and provide most of the basic necessities for human life. The major angiosperm clades comprise 64 orders, as recognized by the APG IV classification.
Hong-yin Hu, Pengchuan Sun, Yongzhi Yang, Jianxiang Ma, Jianquan Liu   +4 more
semanticscholar   +1 more source

The complete plastome of Hyacinthoides non-scripta (L.) Chouard ex Rothm. (Asparagaceae) [PDF]

, 2020
The whole plastome sequence ofHyacinthoides non-scripta, was assembled and annotated in this study.This is the first complete plastid genome for the genusHyacinthoides.
Bilsborrow, Jordan, Culham, Alastair, David, John, Garnett, George J. L., Könyves, Kálmán   +4 more
core   +1 more source