Results 11 to 20 of about 5,866 (139)

Progress, challenge and prospect of plant plastome annotation

open access: yesFrontiers in Plant Science, 2023
The plastome (plastid genome) represents an indispensable molecular data source for studying phylogeny and evolution in plants. Although the plastome size is much smaller than that of nuclear genome, and multiple plastome annotation tools have been ...
Xiao-Jian Qu   +2 more
exaly   +3 more sources

New plastome structural rearrangements discovered in core Tillandsioideae (Bromeliaceae) support recently adopted taxonomy

open access: yesFrontiers in Plant Science, 2022
Full plastome sequences for land plants have become readily accessible thanks to the development of Next Generation Sequencing (NGS) techniques and powerful bioinformatic tools. Despite this vast amount of genomic data, some lineages remain understudied.
Sandra I Vera-Paz   +2 more
exaly   +3 more sources

The complete plastome of Panax stipuleanatus: Comparative and phylogenetic analyses of the genus Panax (Araliaceae)

open access: yesPlant Diversity, 2018
Panax stipuleanatus (Araliaceae) is an endangered and medicinally important plant endemic to China. However, phylogenetic relationships within the genus Panax have remained unclear. In this study, we sequenced the complete plastome of P.
Zhenyan Yang, Yunheng Ji
exaly   +3 more sources

Evolutionary differences in gene loss and pseudogenization among mycoheterotrophic orchids in the tribe Vanilleae (subfamily Vanilloideae)

open access: yesFrontiers in Plant Science, 2023
IntroductionGaleola lindleyana is a mycoheterotrophic orchid belonging to the tribe Vanilleae within the subfamily Vanilloideae.MethodsIn this study, the G.
Lisi Zhou   +4 more
doaj   +1 more source

The first complete plastome sequence from family Flagellariaceae (Flagellaria indica L., Poales)

open access: yesMitochondrial DNA. Part B. Resources, 2021
As a part of phylogenomic study of graminids, we report the complete plastome sequence of Flagellaria indica L. (Flagellariaceae) (NCBI No. MZ504969). This is the first reported complete plastome sequence from the Flagellariaceae.
Sangjin Jo   +3 more
doaj   +1 more source

Complete plastome sequence of Macaranga tanarius (L.) Muell. Arg. (Euphorbiaceae): a fast-growing timber species

open access: yesMitochondrial DNA. Part B. Resources, 2021
Macaranga tanarius (L.) Muell. Arg. is a tree species within Euphorbiaceae, which can be used for building timber and its extract can be used to treat diabetes. In this report, we describe the complete plastome sequence of Macaranga tanarius.
Jiang-Qu Tang   +3 more
doaj   +1 more source

Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense

open access: yesMitochondrial DNA. Part B. Resources, 2020
Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense.
Mingyu Liu, Renping Xu
doaj   +1 more source

Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae)

open access: yesBMC Plant Biology, 2022
Background Comparative genomic analysis exhibits dynamic evolution of plastid genome (plastome) in the clusioid clade of Malpighiales, which comprise five families, including multiple inversions and gene losses.
Sivagami-Jean Claude   +2 more
doaj   +1 more source

Complete plastome sequence of Lonicera gynochlamydea Hemsl. (Caprifoliaceae)

open access: yesMitochondrial DNA. Part B. Resources, 2022
We report and characterize the complete plastome of Lonicera gynochlamydea Hemsl. L. gynochlamydea is a shrub, belonging to the family Caprifoliaceae. Our results show that the length of the complete plastome is 154,643 bp, including 131 genes consisting
Rong-Jia Mo   +5 more
doaj   +1 more source

Comparative Analysis of Complete Chloroplast Genomes of <i>Caltha scaposa</i> for Identification and Phylogenetic Analysis. [PDF]

open access: yesEcol Evol
This study assembled and characterized the complete chloroplast genome of Caltha scaposa, revealing it has the shortest inverted repeat regions among examined Anemoneae taxa and identifying highly variable markers for future phylogenetic work. Phylogenomic analysis of 40 plastomes robustly resolves C.
Chen L, Fan Y, Chen Q, Yu X, Gao T.
europepmc   +2 more sources

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