Results 21 to 30 of about 9,168 (172)

Progress, challenge and prospect of plant plastome annotation

Frontiers in Plant Science, 2023
The plastome (plastid genome) represents an indispensable molecular data source for studying phylogeny and evolution in plants. Although the plastome size is much smaller than that of nuclear genome, and multiple plastome annotation tools have been ...
Xiao-Jian Qu, Dan Zou, Rui-Yu Zhang, Gregory W. Stull, Gregory W. Stull, Ting-Shuang Yi, Ting-Shuang Yi   +6 more
doaj   +1 more source

Evolutionary differences in gene loss and pseudogenization among mycoheterotrophic orchids in the tribe Vanilleae (subfamily Vanilloideae)

Frontiers in Plant Science, 2023
IntroductionGaleola lindleyana is a mycoheterotrophic orchid belonging to the tribe Vanilleae within the subfamily Vanilloideae.MethodsIn this study, the G.
Lisi Zhou, Tongyao Chen, Xiandan Qiu, Jinxin Liu, Shunxing Guo   +4 more
doaj   +1 more source

The first complete plastome sequence from family Flagellariaceae (Flagellaria indica L., Poales)

Mitochondrial DNA. Part B. Resources, 2021
As a part of phylogenomic study of graminids, we report the complete plastome sequence of Flagellaria indica L. (Flagellariaceae) (NCBI No. MZ504969). This is the first reported complete plastome sequence from the Flagellariaceae.
Sangjin Jo, Seonghyun Cho, Wonhee Kim, Ki-Joong Kim   +3 more
doaj   +1 more source

Evolution-Inspired Engineering of Diterpene Biosynthesis via Chloroplast Genome Modification. [PDF]

Plant Biotechnol J
ABSTRACT Terpenes constitute the largest and most structurally diverse class of plant secondary metabolites, with critical roles in plant‐environment interactions and broad industrial applications. Although nuclear genome engineering of terpene pathways has been extensively explored, chloroplast genome engineering remains largely undeveloped, with most
Occhialini A, Chen X, Miller SA, Majdi M, Fuentes Quispe IA, King G, Chen F.   +6 more
europepmc   +2 more sources

Plastome-based phylogenomics elucidate relationships in rare Isoëtes species groups from the Neotropics

, 2021
The genus Iso¨etes is globally distributed. Within the Neotropics, Iso¨etes occurs in various habitats and ecosystems,making it an interesting case study to address phylogenetic and biogeographic questions.
Jovani B. de Souza Pereira (4861111)
core   +1 more source

Complete chloroplast genome sequence of an alpine rhubarb Rheum likiangense

Mitochondrial DNA. Part B. Resources, 2020
Rheum likiangense Samuelsson (Polygonaceae) is an endangered alpine rhubarb in the Qinghai-Tibet Plateau. In this study we report the complete chloroplast genome sequence (plastome) of Rh. likiangense.
Mingyu Liu, Renping Xu
doaj   +1 more source

Captus plastome alignments

, 2023
Plastome alignments created by Captus pipeline.
Hanno Schaefer (479023), Lea Schwung (17451142), Edgardo M. Ortiz (17451141), Mustafa Raza (8738196), Gentaro Shigita (17451144)   +4 more
core   +1 more source

Gene loss, genome rearrangement, and accelerated substitution rates in plastid genome of Hypericum ascyron (Hypericaceae)

BMC Plant Biology, 2022
Background Comparative genomic analysis exhibits dynamic evolution of plastid genome (plastome) in the clusioid clade of Malpighiales, which comprise five families, including multiple inversions and gene losses.
Sivagami-Jean Claude, Seongjun Park, SeonJoo Park   +2 more
doaj   +1 more source

HybPiper plastome alignments

, 2023
Plastome alignments created by HybPiper ...
Hanno Schaefer (479023), Lea Schwung (17451142), Edgardo M. Ortiz (17451141), Mustafa Raza (8738196), Gentaro Shigita (17451144)   +4 more
core   +1 more source

DataSheet_7_Progress, challenge and prospect of plant plastome annotation.pdf

, 2023
The plastome (plastid genome) represents an indispensable molecular data source for studying phylogeny and evolution in plants. Although the plastome size is much smaller than that of nuclear genome, and multiple plastome annotation tools have been ...
Gregory W. Stull (3197712), Xiao-Jian Qu (10450598), Ting-Shuang Yi (474344), Dan Zou (291008), Rui-Yu Zhang (15998522)   +4 more
core   +1 more source