Results 11 to 20 of about 453,402 (256)

A Protein Interaction Map of the Mitotic Spindle [PDF]

open access: yesMolecular Biology of the Cell, 2007
The mitotic spindle consists of a complex network of proteins that segregates chromosomes in eukaryotes. To strengthen our understanding of the molecular composition, organization, and regulation of the mitotic spindle, we performed a system-wide two-hybrid screen on 94 proteins implicated in spindle function in Saccharomyces cerevisiae. We report 604
Wong, Jonathan   +11 more
openaire   +3 more sources

Mapping protein–DNA interactions with DiMeLo-seq [PDF]

open access: yesNature Protocols, 2022
Abstract We recently developed Di rected Me thylation with Lo ng-read seq uencing (DiMeLo-seq) to map protein-DNA interactions genome wide.
Annie Maslan   +8 more
openaire   +3 more sources

A Rice Kinase-Protein Interaction Map     [PDF]

open access: yesPlant Physiology, 2008
AbstractPlants uniquely contain large numbers of protein kinases, and for the vast majority of the 1,429 kinases predicted in the rice (Oryza sativa) genome, little is known of their functions. Genetic approaches often fail to produce observable phenotypes; thus, new strategies are needed to delineate kinase function.
Ding, Xiaodong   +24 more
openaire   +3 more sources

The protein interaction map of bacteriophage lambda [PDF]

open access: yesBMC Microbiology, 2011
Bacteriophage lambda is a model phage for most other dsDNA phages and has been studied for over 60 years. Although it is probably the best-characterized phage there are still about 20 poorly understood open reading frames in its 48-kb genome. For a complete understanding we need to know all interactions among its proteins.
Rajagopala, Seesandra V.   +2 more
openaire   +5 more sources

Prediction of Coffee Effects in Rats with Healthy and NAFLD Conditions Based on Protein-Protein Interaction Network Analysis [PDF]

open access: yesResearch Journal of Pharmacognosy, 2019
Background and objectives: Non-alcoholic fatty liver disease (NAFLD) is a common liver condition. On the other hand, coffee consumption has shown promising for gastrointestinal diseases.
Majid Rezaei-Tavirani   +4 more
doaj   +1 more source

A Map of Interactions between the Proteins of a Retrotransposon [PDF]

open access: yesJournal of Virology, 1998
ABSTRACTThe yeast two-hybrid system and in vitro binding assays were used to characterize 54 potential interactions between the proteins of Tf1, an LTR-retrotransposon found inSchizosaccharomyces pombe. The Tf1 integrase (IN) protein was found to interact strongly with itself and not with other control proteins.
S J, Steele, H L, Levin
openaire   +2 more sources

A protein interaction map of the LSU processome [PDF]

open access: yesGenes & Development, 2015
Maturation of the large ribosomal subunit (LSU) in eukaryotes is a complex and highly coordinated process that requires the concerted action of a large, dynamic, ribonucleoprotein complex, the LSU processome. While we know that >80 ribosome biogenesis factors are required throughout the course of LSU assembly, little is known about how these factors
McCann, Kathleen L.   +3 more
openaire   +2 more sources

Improving Protein–Ligand Interaction Modeling with cryo-EM Data, Templates, and Deep Learning in 2021 Ligand Model Challenge

open access: yesBiomolecules, 2023
Elucidating protein–ligand interaction is crucial for studying the function of proteins and compounds in an organism and critical for drug discovery and design.
Nabin Giri, Jianlin Cheng
doaj   +1 more source

Protein-protein interaction map for yeast TFIID [PDF]

open access: yesNucleic Acids Research, 2003
A major rate-limiting step in transcription initiation by RNA polymerase II is recognition and binding of the TATA element by the transcription factor TFIID. TFIID is composed of TATA binding protein (TBP) and approximately a dozen TBP-associated factors (TAFs).
Gayatri, Yatherajam   +3 more
openaire   +2 more sources

Pan-cancer mapping of differential protein-protein interactions [PDF]

open access: yesScientific Reports, 2020
AbstractDeciphering the variations in the protein interactome is required to reach a systems-level understanding of tumorigenesis. To accomplish this task, we have considered the clinical and transcriptome data on >6000 samples from The Cancer Genome Atlas for 12 different cancers.
Gulfidan, Gizem   +4 more
openaire   +5 more sources

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