Results 131 to 140 of about 6,753,180 (197)

BioSemAF-BiLSTM: a protein sequence feature extraction framework based on semantic and evolutionary information. [PDF]

Front Genet
Zhang Z, Wang Y.
europepmc   +1 more source

Evaluating the significance of embedding-based protein sequence alignment with clustering and double dynamic programming for remote homology. [PDF]

Sci Rep
Spicer R, Raychawdhary N, Danwada S, Udomprasert P, Seals C, Bhattacharya S.   +5 more
europepmc   +1 more source

PRO-LDM: A Conditional Latent Diffusion Model for Protein Sequence Design and Functional Optimization. [PDF]

Adv Sci (Weinh)
Zhang S, Jiang Z, Huang R, Huang W, Peng S, Mo S, Zhu L, Li P, Zhang Z, Pan E, Chen X, Long Y, Liang Q, Tang J, Xu R, Qing R.   +15 more
europepmc   +1 more source

Safe model based optimization balancing exploration and reliability for protein sequence design. [PDF]

Sci Rep
Takizawa S, Mori K, Tanishiki N, Yoshimura D, Ohta A, Teramoto R.   +5 more
europepmc   +1 more source

Prediction of recent HIV-1 infections using Shannon entropy analysis of HIV-1 group-specific antigen protein sequence. [PDF]

Virol J
Fortuin TL, Nkone P, Loubser S, Tiemessen CT, Mayaphi SH.   +4 more
europepmc   +1 more source

Atomic context-conditioned protein sequence design using LigandMPNN. [PDF]

Nat Methods
Dauparas J, Lee GR, Pecoraro R, An L, Anishchenko I, Glasscock C, Baker D.   +6 more
europepmc   +1 more source

InterPro: the protein sequence classification resource in 2025. [PDF]

Nucleic Acids Res
Blum M, Andreeva A, Florentino LC, Chuguransky SR, Grego T, Hobbs E, Pinto BL, Orr A, Paysan-Lafosse T, Ponamareva I, Salazar GA, Bordin N, Bork P, Bridge A, Colwell L, Gough J, Haft DH, Letunic I, Llinares-López F, Marchler-Bauer A, Meng-Papaxanthos L, Mi H, Natale DA, Orengo CA, Pandurangan AP, Piovesan D, Rivoire C, Sigrist CJA, Thanki N, Thibaud-Nissen F, Thomas PD, Tosatto SCE, Wu CH, Bateman A.   +33 more
europepmc   +1 more source

Pareto-optimal sampling for multi-objective protein sequence design. [PDF]

iScience
Luo J, Ding K, Luo Y.
europepmc   +1 more source

Native Silk Fibers: Protein Sequence and Structure Influences on Thermal and Mechanical Properties. [PDF]

Biomacromolecules
Aikman EL, Eccles LE, Stoppel WL.
europepmc   +1 more source

Bilingual language model for protein sequence and structure. [PDF]

NAR Genom Bioinform
Heinzinger M, Weissenow K, Sanchez JG, Henkel A, Mirdita M, Steinegger M, Rost B.   +6 more
europepmc   +1 more source