Results 141 to 150 of about 6,753,180 (197)

Efficient Searches in Protein Sequence Space Through AI-Driven Iterative Learning. [PDF]

Int J Mol Sci
Suárez-Martín I, Risso VA, Romero-Zaliz R, Sanchez-Ruiz JM.   +3 more
europepmc   +1 more source

A Short-Term View of Protein Sequence Evolution from Salmonella. [PDF]

Genome Biol Evol
Cherry JL.
europepmc   +1 more source

Characterizing protein sequence determinants of nuclear condensates by high-throughput pooled imaging with CondenSeq. [PDF]

Nat Methods
Kappel K, Strebinger D, Edmonds KK, Chau-Duy-Tam Vo S, Vockley CM, Biswas T, Farhi SL, Macrae R, Zhang F, Regev A.   +9 more
europepmc   +1 more source

Co-design protein sequence and structure in discrete space via generative flow. [PDF]

Bioinformatics
Yang S, Ju L, Cheng P, Zhou J, Cai Y, Feng D.   +5 more
europepmc   +1 more source

The simplicity of protein sequence-function relationships. [PDF]

Nat Commun
Park Y, Metzger BPH, Thornton JW.
europepmc   +1 more source

Exploring Large Protein Sequence Space through Homology- and Representation-based Hierarchical Clustering. [PDF]

Mol Biol Evol
Chen JZ, Gall B, Pulsford SB, Tokuriki N, Jackson CJ.   +4 more
europepmc   +1 more source

CysDBase: a comprehensive database of cysteine post-translational modifications across protein sequence, structure, microenvironment, class, cellular localization, biological pathway, and taxonomy. [PDF]

Database (Oxford)
Himaja D, Bandyopadhyay D.
europepmc   +1 more source

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Aligning a DNA sequence with a protein sequence

Proceedings of the first annual international conference on Computational molecular biology - RECOMB '97, 1997
We develop several algorithms for the problem of aligning DNA sequence with a protein sequence. Our methods account for frameshift errors, but not for introns in the DNA sequence. Thus, they are particularly appropriate for comparing a cDNA sequence that suffers from sequencing errors with an amino acid sequence or a protein sequence database.
Zheng Zhang 0004, William R. Pearson, Webb Miller   +2 more
openaire   +2 more sources

Protein Sequence Modules

Journal of Biomolecular Structure and Dynamics, 2005
Conserved protein sequence segments are commonly believed to correspond to functional sites in the protein sequence. A novel approach is proposed to profile the changing degree of conservation along the protein sequence, by evaluating the occurrence frequencies of all short oligopeptides of the given sequence in a large proteome database.
E, Aharonovsky, E N, Trifonov
openaire   +2 more sources