Results 31 to 40 of about 3,139,545 (345)
Percolation in protein sequence space. [PDF]
PLoS ONE, 2017 The currently known protein sequences are not distributed equally in sequence space, but cluster into families. Analyzing the cluster size distribution gives a glimpse of the large and unknown extant protein sequence space, which has been explored during
Patrick C F Buchholz +2 more
doaj +1 more source
Predicting Protein–Protein Interactions Based on Ensemble Learning-Based Model from Protein Sequence
Biology, 2022 Protein–protein interactions (PPIs) play an essential role in many biological cellular functions. However, it is still tedious and time-consuming to identify protein–protein interactions through traditional experimental methods.
Xinke Zhan +7 more
doaj +1 more source
Sequence correlations shape protein promiscuity
, 2011 We predict analytically that diagonal correlations of amino acid positions within protein sequences statistically enhance protein propensity for nonspecific binding. We use the term 'promiscuity' to describe such nonspecific binding.
Afek, Ariel +2 more
core +1 more source
Bayesian sequence learning for predicting protein cleavage points [PDF]
, 2005 A challenging problem in data mining is the application of efficient techniques to automatically annotate the vast databases of biological sequence data.
Mayo, Michael
core +2 more sources
A Survey on Data Compression Methods for Biological Sequences
Information, 2016 The ever increasing growth of the production of high-throughput sequencing data poses a serious challenge to the storage, processing and transmission of these data. As frequently stated, it is a data deluge.
Morteza Hosseini +2 more
doaj +1 more source
Predicting diverse M-best protein contact maps
, 2015 Protein contacts contain important information for protein structure and functional study, but contact prediction from sequence information remains very challenging.
Ma, Jianzhu +3 more
core +1 more source
Alignment of helical membrane protein sequences using AlignMe [PDF]
, 2013 Few sequence alignment methods have been designed specifically for integral membrane proteins, even though these important proteins have distinct evolutionary and structural properties that might affect their alignments.
Forrest, Lucy R. +3 more
core +3 more sources
Permanent improved high-quality draft genome sequence of Nocardia casuarinae strain BMG51109, an endophyte ofactinorhizal root nodules of Casuarina glauca [PDF]
, 2016 Here, we report the first genome sequence of aNocardiaplant endophyte, N. casuarinaestrain BMG51109, isolated fromCasu-arina glaucaroot nodules. The improved high-quality draft genome sequence contains 8,787,999 bp with a 68.90% GC contentand 7,307 ...
Beauchemin, Nicholas +18 more
core +4 more sources
Molecules, 2019 Interactions between proteins and DNAs play essential roles in many biological processes. DNA binding proteins can be classified into two categories. Double-stranded DNA-binding proteins (DSBs) bind to double-stranded DNA and are involved in a series of ...
Changgeng Tan +3 more
doaj +1 more source
Structurally constrained protein evolution: results from a lattice simulation
, 2000 We simulate the evolution of a protein-like sequence subject to point mutations, imposing conservation of the ground state, thermodynamic stability and fast folding. Our model is aimed at describing neutral evolution of natural proteins.
Bastolla, Ugo +2 more
core +1 more source