Results 31 to 40 of about 5,259,649 (407)

Structural genomics analysis of uncharacterized protein families overrepresented in human gut bacteria identifies a novel glycoside hydrolase. [PDF]

, 2014
BackgroundBacteroides spp. form a significant part of our gut microbiome and are well known for optimized metabolism of diverse polysaccharides. Initial analysis of the archetypal Bacteroides thetaiotaomicron genome identified 172 glycosyl hydrolases and
Axelrod, Herbert L, Chang, Yuanyuan, Eberhardt, Ruth Y, Godzik, Adam, Li, Zhanwen, Rigden, Daniel J, Sheydina, Anna, Zmasek, Christian C   +7 more
core   +2 more sources

Expression of goat RNA binding protein (NANOS2), development and evaluation of anti-NANOS2 IgY antibodies

Czech Journal of Animal Science, 2015
Available rabbit anti-NANOS2 antibodies failed to recognize the NANOS2 protein of goat origin though they showed better reactivity towards the same protein of human and mice origin.
X. Yao, H. Ren, W. Yang, T. Diraviyam, F. Tang, M. Yu, J. Hua, X. Zhang, S. Peng   +8 more
doaj   +1 more source

Liquid Chromatography Electron Capture Dissociation Tandem Mass Spectrometry (LC-ECD-MS/MS) versus Liquid Chromatography Collision-induced Dissociation Tandem Mass Spectrometry (LC-CID-MS/MS) for the Identification of Proteins [PDF]

, 2007
Electron capture dissociation (ECD) offers many advantages over the more traditional fragmentation techniques for the analysis of peptides and proteins, although the question remains: How suitable is ECD for incorporation within proteomic strategies for ...
A. G. Marshall, A. Stensballe, D. M. Horn, E. C. Huang, E. C. Huang, E. Mirgorodskaya, F. W. McLafferty, H. J. Cooper, H. J. Cooper, H. J. Cooper, H. J. Cooper, H. J. Cooper, J. P. Chervet, J. R. Yates, K. Hakansson, K. R. Jennings, K. Vanhoutte, L. Ding, M. L. Nielsen, M. M. Savitski, M. M. Savitski, M. Mann, M. Palmblad, M. S. Wilm, M. Wilm, O. A. Silivra, P. Arpino, P. Roepstorff, R. A. Zubarev, R. A. Zubarev, R. A. Zubarev, R. L. Kelleher, S. D. H. Shi, S. H. Chiou, T. Baba, W. Davidson, Y. O. Tsybin, Z. Q. Guan, Z. Q. Guan   +38 more
core   +4 more sources

Density Peak clustering of protein sequences associated to a Pfam clan reveals clear similarities and interesting differences with respect to manual family annotation

BMC Bioinformatics, 2021
Background The identification of protein families is of outstanding practical importance for in silico protein annotation and is at the basis of several bioinformatic resources.
Elena Tea Russo, Alessandro Laio, Marco Punta   +2 more
doaj   +1 more source

iLearn : an integrated platform and meta-learner for feature engineering, machine-learning analysis and modeling of DNA, RNA and protein sequence data

Briefings Bioinform., 2019
With the explosive growth of biological sequences generated in the post-genomic era, one of the most challenging problems in bioinformatics and computational biology is to computationally characterize sequences, structures and functions in an efficient ...
Zhen Chen, Pei Zhao, Fuyi Li, T. Marquez-Lago, A. Leier, Jerico Revote, Yan Zhu, D. Powell, T. Akutsu, Geoffrey I. Webb, K. Chou, Alexander Ian Smith, R. Daly, Jian Li, Jiangning Song   +14 more
semanticscholar   +1 more source

Cloning and characterisation of the rad9 DNA repair gene from Schizosaccharomyces pombe [PDF]

, 1991
The rad9.192 DNA repair mutant from the fission yeast, Schizosaccharomyces pombe, is sensitive to both UV and ionising radiation. The rad9 gene has been cloned by complementation of the gamma-ray sensitivity of the mutant cell line.
Carr, Antony M, Lehmann, Alan R, Murray, Johanne M, Watts, Felicity Z   +3 more
core   +2 more sources

A protein structural study based on the centrality analysis of protein sequence feature networks.

PLoS ONE, 2021
In this paper, we use network approaches to analyze the relations between protein sequence features for the top hierarchical classes of CATH and SCOP. We use fundamental connectivity measures such as correlation (CR), normalized mutual information rate ...
Xiaogeng Wan, Xinying Tan
doaj   +1 more source

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

Nucleic Acids Res., 2016
The MPI Bioinformatics Toolkit (http://toolkit.tuebingen.mpg.de) is an open, interactive web service for comprehensive and collaborative protein bioinformatic analysis.
V. Alva, Seung-Zin Nam, J. Söding, A. Lupas   +3 more
semanticscholar   +1 more source

ConSole: using modularity of contact maps to locate solenoid domains in protein structures. [PDF]

, 2014
BackgroundPeriodic proteins, characterized by the presence of multiple repeats of short motifs, form an interesting and seldom-studied group. Due to often extreme divergence in sequence, detection and analysis of such motifs is performed more reliably on
Godzik, Adam, Hrabe, Thomas
core   +4 more sources

Progressive search in tandem mass spectrometry

BMC Bioinformatics, 2023
Background High-throughput Proteomics has been accelerated by (tandem) mass spectrometry. However, the slow speed of mass spectra analysis prevents the analysis results from being up-to-date.
Yoonsung Joh, Kangbae Lee, Hyunwoo Kim, Heejin Park   +3 more
doaj   +1 more source