Results 31 to 40 of about 4,957,023 (387)

A protein structural study based on the centrality analysis of protein sequence feature networks.

PLoS ONE, 2021
In this paper, we use network approaches to analyze the relations between protein sequence features for the top hierarchical classes of CATH and SCOP. We use fundamental connectivity measures such as correlation (CR), normalized mutual information rate ...
Xiaogeng Wan, Xinying Tan
doaj   +1 more source

The MPI bioinformatics Toolkit as an integrative platform for advanced protein sequence and structure analysis

Nucleic Acids Res., 2016
The MPI Bioinformatics Toolkit (http://toolkit.tuebingen.mpg.de) is an open, interactive web service for comprehensive and collaborative protein bioinformatic analysis.
V. Alva, Seung-Zin Nam, J. Söding, A. Lupas   +3 more
semanticscholar   +1 more source

Sequence of a putative human housekeeping gene (HK33) localized on chromosome 1 [PDF]

, 1994
A gene (X33) localized on human chromosome 1 has been detected by crossreaction of its fusion protein with a monospecific antiserum directed against human vitamin-D-binding protein (hDBP; group-specific component).
Chirgwin, Church, Estaller, Feinberg, Hoffmann, Johnson, Kozak, Manley, McLeod, Meissner, Proudfood, Proudfood, Prunier, Sambrook, Sanger, Sheets, Smith, Tabor, Yanisch-Perron   +18 more
core   +1 more source

Progressive search in tandem mass spectrometry

BMC Bioinformatics, 2023
Background High-throughput Proteomics has been accelerated by (tandem) mass spectrometry. However, the slow speed of mass spectra analysis prevents the analysis results from being up-to-date.
Yoonsung Joh, Kangbae Lee, Hyunwoo Kim, Heejin Park   +3 more
doaj   +1 more source

SeqCP: A sequence-based algorithm for searching circularly permuted proteins

Computational and Structural Biotechnology Journal, 2023
Circular permutation (CP) is a protein sequence rearrangement in which the amino- and carboxyl-termini of a protein can be created in different positions along the imaginary circularized sequence.
Chi-Chun Chen, Yu-Wei Huang, Hsuan-Cheng Huang, Wei-Cheng Lo, Ping-Chiang Lyu   +4 more
doaj   +1 more source

CAPS: coevolution analysis using protein sequences [PDF]

Bioinformatics, 2006
Abstract Summary: Coevolution Analysis using Protein Sequences (CAPS) is a PERL based software that identifies co-evolution between amino acid sites. Blosum-corrected amino acid distances are used to identify amino acid co-variation. The phylogenetic sequence relationships are used to remove the phylogenetic and stochastic dependencies ...
Mario A, Fares, David, McNally
openaire   +2 more sources

Periplakin, a novel component of cornified envelopes and desmosomes that belongs to the plakin family and forms complexes with envoplakin [PDF]

, 1997
The cornified envelope is a layer of transglutaminase cross-linked protein that is assembled under the plasma membrane of keratinocytes in the outermost layers of the epidermis.
Argos, Arnemann, Bernier, Chou, Claros, Duden, Fey, Foisner, Foisner, Garnier, Green, Green, Guo, Haftek, Heid, Huber, Ishida-Yamamoto, Knight, Kouklis, Kozak, Kyte, Lupas, Ma, Maestrini, McLachlan, McLean, Ming, Nicholson, Nikolic, Ouyang, Parrish, Parry, Pasdar, Pasdar, Rice, Robinson, Ruhrberg, Ruhrberg, Sawamura, Sawamura, Schmidt, Sheu, Siefring, Simon, Stappenbeck, Stappenbeck, Stappenbeck, Steinert, Steinert, Sun, Surya, Svitkina, Tang, Uitto, Virata, Wiche, Wiche, Yang   +57 more
core   +2 more sources

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions.

DNA Research, 1996
The sequence determination of the entire genome of the Synechocystis sp. strain PCC6803 was completed. The total length of the genome finally confirmed was 3,573,470 bp, including the previously reported sequence of 1,003,450 bp from map position 64% to ...
Takakazu, Kaneko, Shusei, Sato, Hirokazu, Kotani, Ayako, Tanaka, Erika, Asamizu, Yasukazu, Nakamura, Nobuyuki, Miyajima, Makoto, Hirosawa, Masahiro, Sugiura, Shigemi, Sasamoto, Takaharu, Kimura, T. Hosouchi, Ai, Matsuno, Akiko, Muraki, Naomi, Nakazaki, Kaoru, Naruo, Satomi, Okumura, Sayaka, Shimpo, Chie, Takeuchi, Tsuyuko, Wada, Watanabe, Manabu, Yamada, Miho, Yasuda, Satoshi, Tabata   +45 more
semanticscholar   +1 more source

Linking glycemic dysregulation in diabetes to symptoms, comorbidities, and genetics through EHR data mining

eLife, 2019
Diabetes is a diverse and complex disease, with considerable variation in phenotypic manifestation and severity. This variation hampers the study of etiological differences and reduces the statistical power of analyses of associations to genetics ...
Isa Kristina Kirk, Christian Simon, Karina Banasik, Peter Christoffer Holm, Amalie Dahl Haue, Peter Bjødstrup Jensen, Lars Juhl Jensen, Cristina Leal Rodríguez, Mette Krogh Pedersen, Robert Eriksson, Henrik Ullits Andersen, Thomas Almdal, Jette Bork-Jensen, Niels Grarup, Knut Borch-Johnsen, Oluf Pedersen, Flemming Pociot, Torben Hansen, Regine Bergholdt, Peter Rossing, Søren Brunak   +20 more
doaj   +1 more source

Sequence analysis of the genome of the unicellular cyanobacterium Synechocystis sp. strain PCC6803. II. Sequence determination of the entire genome and assignment of potential protein-coding regions (supplement).

DNA Research, 1996
The sequence determination of the entire genome of the Synechocystis sp. strain PCC6803 was completed. The total length of the genome finally confirmed was 3,573,470 bp, including the previously reported sequence of 1,003,450 bp from map position 64% to ...
T. Kaneko, Shusei Sato, H. Kotani, Ayako Tanaka, E. Asamizu, Yasukazu Nakamura, N. Miyajima, M. Hirosawa, M. Sugiura, S. Sasamoto, Takaharu Kimura, T. Hosouchi, A. Matsuno, A. Muraki, N. Nakazaki, K. Naruo, Satomi Okumura, Sayaka Shimpo, C. Takeuchi, T. Wada, A. Watanabe, M. Yamada, Miho Yasuda, S. Tabata   +23 more
semanticscholar   +1 more source