ER5, a tomato cDNA encoding an ethylene-responsive LEA-like protein: characterization and expression in response to drought, ABA and wounding [PDF]
, 1997 We report the isolation by differential display of a novel tomato ethylene-responsive cDNA, designated ER5. RT-PCR analysis of ER5 expression revealed an early (15 min) and transient induction by ethylene in tomato fruit, leaves and roots.
Bouzayen, Mondher +6 more
core +2 more sources
Species-specific analysis of protein sequence motifs using mutual information
BMC Bioinformatics, 2005 Background Protein sequence motifs are by definition short fragments of conserved amino acids, often associated with a specific function. Accordingly protein sequence profiles derived from multiple sequence alignments provide an alternative description ...
Weckwerth Wolfram +3 more
doaj +1 more source
Sequence and Structure-Based Analysis of Specificity Determinants in Eukaryotic Protein Kinases
Cell Reports, 2021 Summary: Protein kinases lie at the heart of cell-signaling processes and are often mutated in disease. Kinase target recognition at the active site is in part determined by a few amino acids around the phosphoacceptor residue. However, relatively little
David Bradley +5 more
doaj +1 more source
Protein Sequence Retrieval and Phylogenetic Analysis of Various α-amylase Producing Bacillus species [PDF]
International Journal Bioautomation, 2020 Due to advancements made in biotechnology, genetic manipulation and medium optimization has been possible and that has led to high yield in enzyme especially α-amylase with improvised properties that find its application suitably in detergent, laundry ...
Sonali Priyadarshini +2 more
doaj +1 more source
Analysis of protein sequences [PDF]
Genome Biology, 2000 Several programs to predict sequence and structural features of a protein can be run simultaneously on the PredictProtein server.
openaire +1 more source
Sequence composition and environment effects on residue fluctuations in protein structures [PDF]
, 2009 The spectrum and scale of fluctuations in protein structures affect the range of cell phenomena, including stability of protein structures or their fragments, allosteric transitions and energy transfer.
Anatoly M. Ruvinsky +2 more
core +3 more sources
Analysis of protein-coding genetic variation in 60,706 humans
Nature, 2015 Large-scale reference data sets of human genetic variation are critical for the medical and functional interpretation of DNA sequence changes. Here we describe the aggregation and analysis of high-quality exome (protein-coding region) DNA sequence data ...
James Y. Zou
semanticscholar +1 more source
Filtering Degenerate Patterns with Application to Protein Sequence Analysis
Algorithms, 2013 In biology, the notion of degenerate pattern plays a central role for describing various phenomena. For example, protein active site patterns, like those contained in the PROSITE database, e.g., [FY ]DPC[LIM][ASG]C[ASG], are, in general, represented by ...
Matteo Comin, Davide Verzotto
doaj +1 more source
Improved mass spectrometry compatibility is afforded by ammoniacal silver staining [PDF]
, 2006 Sequence coverage in MS analysis of protein digestion-derived peptides is a key issue for detailed characterization of proteins or identification at low quantities.
Berggren +19 more
core +4 more sources
Fast, scalable generation of high-quality protein multiple sequence alignments using Clustal Omega
Molecular Systems Biology, 2011 Multiple sequence alignments are fundamental to many sequence analysis methods. Most alignments are computed using the progressive alignment heuristic. These methods are starting to become a bottleneck in some analysis pipelines when faced with data sets
Fabian Sievers +11 more
semanticscholar +1 more source