Results 111 to 120 of about 185,351 (165)

hs_leftventricle_P_sites_minus.bed.bw

, 2023
human heart ribo-seq and rna ...
Nathan Witmer (15368572)
core   +1 more source

Additional file 1 of Comparative ribosome profiling reveals distinct translational landscapes of salt-sensitive and -tolerant rice

, 2021
Additional file 1: Table S1.
Yu Yu (49054), Lina Wang (44695), Xiaoyu Yang (547580), Linlin Luo (1898449), Shuoshuo Wang (11057523), Lei Gao (6566), Beixin Mo (732788), Jie Cui (198388), Lin Liu (11270102), Bo Song (255492)   +9 more
core   +1 more source

Optimization of ribosome profiling in plants including structural analysis of rRNA fragments

Plant Methods
Background Ribosome profiling (or Ribo-seq) is a technique that provides genome-wide information on the translational landscape (translatome). Across different plant studies, variable methodological setups have been described which raises questions about
Michael K. Y. Ting, Yang Gao, Rouhollah Barahimipour, Rabea Ghandour, Jinghan Liu, Federico Martinez-Seidel, Julia Smirnova, Vincent Leon Gotsmann, Axel Fischer, Michael J. Haydon, Felix Willmund, Reimo Zoschke   +11 more
doaj   +1 more source

Active Ribosome Profiling with RiboLace

Cell Reports, 2018
Summary: Ribosome profiling, or Ribo-seq, is based on large-scale sequencing of RNA fragments protected from nuclease digestion by ribosomes. Thanks to its unique ability to provide positional information about ribosomes flowing along transcripts, this ...
Massimiliano Clamer, Toma Tebaldi, Fabio Lauria, Paola Bernabò, Rodolfo F. Gómez-Biagi, Marta Marchioretto, Divya T. Kandala, Luca Minati, Elena Perenthaler, Daniele Gubert, Laura Pasquardini, Graziano Guella, Ewout J.N. Groen, Thomas H. Gillingwater, Alessandro Quattrone, Gabriella Viero   +15 more
doaj   +1 more source

Transcriptome and translatome profiling of Col-0 and grp7grp8 under ABA treatment in Arabidopsis

Scientific Data
Abscisic acid (ABA) is a crucial phytohormone that regulates plant growth and stress responses. While substantial knowledge exists about transcriptional regulation, the molecular mechanisms underlying ABA-triggered translational regulation remain unclear.
Jing Zhang, Yongxin Xu, Jun Xiao
doaj   +1 more source

RNA-Ribo Explorer: interactive mining and visualisation of Ribosome profiling data

, 2018
Preprint descripbing a software dubbed RNA-Ribo Explorer. See its webpage on ATGC bioinformatics platformhttp://atgc-montpellier.fr/rreand the source code on gitlabhttps://gite.lirmm.fr/rivals/RREContext Long, translation was thought as a stable and ...
David, Alexandre, Rivals, Eric, Paulet, Damien   +2 more
core   +4 more sources

Prediction and evaluation of Split-ORFs using Ribo-seq data

Abstract Split Open Reading frames (Split-ORFs) occur in transcripts containing at least two open reading frames, each encoding a part of the same full-length protein. These multiple open reading frames arise from alternatively spliced transcript isoforms.
Christina Kalk, Justin Murtagh, Vladimir Despic, Michaela Müller-McNicoll, Marcel H. Schulz   +4 more
openaire   +3 more sources

Ribo-attenuator animation

, 2017
Riboswitches are structural genetic regulatory elements that directly couple the sensing of small molecules to gene expression. They have considerable potential for applications throughout synthetic biology and bio-manufacturing as they are able to sense
Tom Newport (643261)
core   +1 more source

Comparative transcriptomics and ribo-seq: Looking at de novo gene emergence in Saccharomycotina

, 2017
In de novo gene emergence, a segment of non-coding DNA undergoes a series of changes which enables transcription, potentially leading to a new protein that could eventually acquire a novel function.
Lucas Carey, Mar Albà, William Blevins
core   +1 more source

Identification of microprotein-coding intronic polyadenylation isoforms and function in genotoxic anticancer drug response

Genome Biology
Background Many transcript isoforms generated by intronic polyadenylation (IPA) encode isoforms of canonical proteins. Microproteins are an emerging class of small proteins translated from small open reading frames (sORFs) in noncoding RNAs and mRNAs ...
Alexandre Devaux, Iris Tanaka, Quentin Fouilleul, Amélie Heneman-Masurel, Mandy Cadix, Sophie Michallet, Alina Chakraborty, Céline M. Labbé, Nicolas Fontrodona, Subhadarsini Sahoo, Jean-Baptiste Claude, Marc Deloger, Pierre Gestraud, Ludovic Tessier, Hussein Mortada, Sonia Lameiras, Virginie Raynal, Sylvain Baulande, Nicolas Servant, Didier Auboeuf, Béatrice Eymin, Stéphan Vagner, Martin Dutertre   +22 more
doaj   +1 more source