Results 111 to 120 of about 136,643 (153)

Integrative analysis of RNA-seq and Ribo-seq reveals that lncRNA regulates chicken myogenesis through encoding peptide. [PDF]

J Anim Sci Biotechnol
Niu Y, He L, An Z, Yuan M, Ji H, Wang W, Wei C, Han R, Tian W, Tian Y, Liu X, Kang X, Li Z.   +12 more
europepmc   +1 more source

Sequence grammar and dynamics of subcellular translation revealed by APEX-Ribo-Seq

Abstract Local translation at specific subcellular regions is proposed to define appropriate protein destinations and functions. However, our understanding of local translation is still far from complete, due to a lack of versatile analysis tools.
Kotaro Tomuro, Takanori Akaiwa, Akane Harada, Kenta Kobayashi, Nobuyuki Shiina, Kyogo Kawaguchi, Yuichi Shichino, Shintaro Iwasaki   +7 more
openaire   +1 more source

riboseq-flow results for OTTR ribo-seq data in human cells from Ferguson et al., 2023

<h3>Riboseq-flow: A streamlined, reliable pipeline for ribosome profiling data analysis and quality control</h3> <p>Underlying data for Use case I example from the manuscript introducing <strong>riboseq-flow</strong>, a ...
Iosub, Ira
core   +1 more source

Ribo-Seq Analysis-Based Elucidation of the Dynamic Translation Landscape of Yak Ovarian Tissues in Different Reproductive Stages. [PDF]

FASEB J
Hu L, Guo S, Cao M, Xiong L, Ding Z, Kang Y, Zhang B, Cai B, Pei J, Guo X.   +9 more
europepmc   +1 more source

Comprehensive profiling of ribo-seq detected small sequences in yeast reveals robust conservation patterns and their potential mechanisms of origin. [PDF]

BMC Genomics
Reyes Loaiciga C, Li W, Zhao XQ, Li J.
europepmc   +1 more source

What can Ribo-seq and proteomics tell us about the non-canonical proteome?

, 2023
Prensner JR, Abelin JG, Kok LW, Clauser KR, Mudge JM, Ruiz-Orera J, Bassani-Sternberg M, Deutsch EW, van Heesch S.   +8 more
europepmc   +1 more source

New insights into the efficient secretion of foreign protein in Bacillus subtilis via Ribo-seq and RNA-seq integrative analyses. [PDF]

BMC Microbiol
Miao H, Xiang X, Cheng L, Wu Q, Huang Z.
europepmc   +1 more source

Prediction and evaluation of Split-ORFs using Ribo-seq data

Version 1.0 Split-ORF pipeline results and input upload Files belong to the two steps of the Split-ORF pipeline: split-orf-prediction files ribo-cov files split-orf-prediction Input2023.zip: Input files to the split-orf-prediction module used for the pape run_07.04.2026-16.05.28_NMD_cont_subtraction.zip: results of split-orf-prediction for NMD ...
Schulz, Marcel H., Müller-McNicoll, Michaela, Despic, Vladimir, Murtagh, Justin   +3 more
openaire   +1 more source

Uncovering the small proteome of Methanosarcina mazei using Ribo-seq and peptidomics under different nitrogen conditions. [PDF]

Nat Commun
Tufail MA, Jordan B, Hadjeras L, Gelhausen R, Cassidy L, Habenicht T, Gutt M, Hellwig L, Backofen R, Tholey A, Sharma CM, Schmitz RA.   +11 more
europepmc   +1 more source

Identification of genes associated with sperm storage capacity in hens at different times after insemination by RNA-seq and Ribo-seq. [PDF]

BMC Genomics
Chai R, Xiao C, Yang Z, Du W, Lv K, Zhang J, Yang X.   +6 more
europepmc   +1 more source