Results 121 to 130 of about 168,078 (169)

nRibo-Seq

, 2021
Measuring the time required for polysome assembly by Ribo-Seq of nascent ...
Johanna Schott
core   +3 more sources

Overgrazing‐Induced Root Carbohydrate Depletion During Winter Dormancy Drives the Decline of Stipa purpurea Populations in the Tibetan Alpine Steppe

Land Degradation &Development, Volume 37, Issue 15, Page 11516-11532, September 2026.
ABSTRACT Plant carbon allocation and physiology are influenced by overgrazing during the growth period. However, the response of plant physiological processes to overgrazing during winter dormancy remains unclear. We analyzed root physiological processes of Stipa purpurea in winter dormancy across three plots: over grazing (FG), exclusions of 2 years ...
Jianbo Wu, Qingquan Han, Sheng Zhang, Xiaodan Wang   +3 more
wiley   +1 more source

Optimization of ribosome profiling in plants including structural analysis of rRNA fragments

Plant Methods
Background Ribosome profiling (or Ribo-seq) is a technique that provides genome-wide information on the translational landscape (translatome). Across different plant studies, variable methodological setups have been described which raises questions about
Michael K. Y. Ting, Yang Gao, Rouhollah Barahimipour, Rabea Ghandour, Jinghan Liu, Federico Martinez-Seidel, Julia Smirnova, Vincent Leon Gotsmann, Axel Fischer, Michael J. Haydon, Felix Willmund, Reimo Zoschke   +11 more
doaj   +1 more source

Conditional eIF2A Deletion Suggests Extra‐Adipose Mechanisms Underlying Metabolic Syndrome in Total‐Body eIF2A Knockout Mice

FASEB BioAdvances, Volume 8, Issue 9, September 2026.
Adipose tissue‐specific deficiency of eIF2A is insufficient to reproduce the metabolic defects observed in total‐body eIF2A knockout mice, suggesting that the systemic metabolic effects observed in these mice may arise from coordinated functions across multiple organs.
Adedeji Isaac Adeloye, Richard Anderson, Anchal Agarwal, Barsanjit Mazumder, Taras Y. Nazarko, Atefeh Bagheri, Archana Prabahar, Peng Jiang, Frank Tedeschi, William C. Merrick, David A. Buchner, Maria Hatzoglou, Roman V. Kondratov, Anton A. Komar   +13 more
wiley   +1 more source

Active Ribosome Profiling with RiboLace

Cell Reports, 2018
Summary: Ribosome profiling, or Ribo-seq, is based on large-scale sequencing of RNA fragments protected from nuclease digestion by ribosomes. Thanks to its unique ability to provide positional information about ribosomes flowing along transcripts, this ...
Massimiliano Clamer, Toma Tebaldi, Fabio Lauria, Paola Bernabò, Rodolfo F. Gómez-Biagi, Marta Marchioretto, Divya T. Kandala, Luca Minati, Elena Perenthaler, Daniele Gubert, Laura Pasquardini, Graziano Guella, Ewout J.N. Groen, Thomas H. Gillingwater, Alessandro Quattrone, Gabriella Viero   +15 more
doaj   +1 more source

Transcriptome and translatome profiling of Col-0 and grp7grp8 under ABA treatment in Arabidopsis

Scientific Data
Abscisic acid (ABA) is a crucial phytohormone that regulates plant growth and stress responses. While substantial knowledge exists about transcriptional regulation, the molecular mechanisms underlying ABA-triggered translational regulation remain unclear.
Jing Zhang, Yongxin Xu, Jun Xiao
doaj   +1 more source

Prediction and evaluation of Split-ORFs using Ribo-seq data

Abstract Split Open Reading frames (Split-ORFs) occur in transcripts containing at least two open reading frames, each encoding a part of the same full-length protein. These multiple open reading frames arise from alternatively spliced transcript isoforms.
Christina Kalk, Justin Murtagh, Vladimir Despic, Michaela Müller-McNicoll, Marcel H. Schulz   +4 more
openaire   +3 more sources

Refinement of Leishmania donovani Genome Annotations in the Light of Ribosome-Protected mRNAs Fragments (Ribo-Seq Data). [PDF]

Genes (Basel), 2023
Sánchez-Salvador A, González-de la Fuente S, Aguado B, Yates PA, Requena JM.   +4 more
europepmc   +1 more source

Identification of microprotein-coding intronic polyadenylation isoforms and function in genotoxic anticancer drug response

Genome Biology
Background Many transcript isoforms generated by intronic polyadenylation (IPA) encode isoforms of canonical proteins. Microproteins are an emerging class of small proteins translated from small open reading frames (sORFs) in noncoding RNAs and mRNAs ...
Alexandre Devaux, Iris Tanaka, Quentin Fouilleul, Amélie Heneman-Masurel, Mandy Cadix, Sophie Michallet, Alina Chakraborty, Céline M. Labbé, Nicolas Fontrodona, Subhadarsini Sahoo, Jean-Baptiste Claude, Marc Deloger, Pierre Gestraud, Ludovic Tessier, Hussein Mortada, Sonia Lameiras, Virginie Raynal, Sylvain Baulande, Nicolas Servant, Didier Auboeuf, Béatrice Eymin, Stéphan Vagner, Martin Dutertre   +22 more
doaj   +1 more source

Genome-wide analysis reveals transcriptional and translational changes during diapause of the Asian corn borer (Ostrinia furnacalis)

BMC Biology
Background Diapause, a pivotal phase in the insect life cycle, enables survival during harsh environmental conditions. Unraveling the gene expression profiles of the diapause process helps uncover the molecular mechanisms that underlying diapause, which ...
Xingzhuo Yang, Xianguo Zhao, Zhangwu Zhao, Juan Du   +3 more
doaj   +1 more source