Results 121 to 130 of about 185,351 (165)

Refinement of Leishmania donovani Genome Annotations in the Light of Ribosome-Protected mRNAs Fragments (Ribo-Seq Data). [PDF]

Genes (Basel), 2023
Sánchez-Salvador A, González-de la Fuente S, Aguado B, Yates PA, Requena JM.   +4 more
europepmc   +1 more source

Genome-wide analysis reveals transcriptional and translational changes during diapause of the Asian corn borer (Ostrinia furnacalis)

BMC Biology
Background Diapause, a pivotal phase in the insect life cycle, enables survival during harsh environmental conditions. Unraveling the gene expression profiles of the diapause process helps uncover the molecular mechanisms that underlying diapause, which ...
Xingzhuo Yang, Xianguo Zhao, Zhangwu Zhao, Juan Du   +3 more
doaj   +1 more source

Ribo-Tag.

, 2019
(A) Overview of the procedure. Tissue homogenate, following removal of nuclei and cell debris (S1 supernatant), is split into fractions for purifying specific classes of nucleic acids.
Lech Kaczmarczyk (587512), Ashish Rajput (269079), Stefan Bonn (2619949), Joachim Degen (214705), Vikas Bansal (79044), Walker Scot Jackson (7164908), Raza-ur Rahman (7164899), Wiesław Krzyżak (7164902), Stefanie Poll (7164905), Martin Fuhrmann (237245)   +9 more
core   +1 more source

Evaluation of RNA extraction and rRNA depletion protocols for RNA-Seq in eleven edible seaweed species from brown, red, and green algae.

PLoS ONE
Seaweeds represent a promising resource for food as well as pharmaceutical and cosmetic applications. However, genomic and transcriptomic research on these organisms remains underdeveloped, partly due to technical challenges in DNA/RNA extraction and ...
Rob J Dekker, Wim A Ensink, Marina F van Olst, Selina M van Leeuwen, Wim C de Leeuw, Martijs J Jonker, Timo M Breit   +6 more
doaj   +1 more source

Mutant NPM1 marginally impacts ribosome footprint in acute myeloid leukemia cells

eJHaem
Background NPM1‐mutated acute myeloid leukemia (AML) is the most frequent AML subtype. As wild‐type NPM1 is known to orchestrate ribosome biogenesis, it has been hypothesized that altered translation may contribute to leukemogenesis and leukemia ...
Lorenzo Brunetti, Giulia Pianigiani, Michael C. Gundry, Margaret A. Goodell, Brunangelo Falini   +4 more
doaj   +1 more source

Optimization of Ribosome Footprinting Conditions for Ribo-Seq in Human and <i>Drosophila melanogaster</i> Tissue Culture Cells. [PDF]

Front Mol Biosci, 2021
Douka K, Agapiou M, Birds I, Aspden JL.
europepmc   +1 more source

Establishment of the Ribo-Seq method and Exploration of the Translatome in Chlamydomonas reinhardtii

Translation is a ubiquitous, yet enigmatic process central to all cellular life on earth. Despite being a subject of research for many decades, its enormous complexity makes it difficult to study translation. The development of the Ribo-Seq technique, a combination of classical ribosome profiling and next generation sequencing, enabled scientists to ...
openaire   +2 more sources

Ribo-seq rRNA reads reveal co-predicted signatures of ribosome heterogeneity and collisions. [PDF]

Brief Bioinform
Kyei-Baffour ES, Faller WJ, Alkan F.
europepmc   +1 more source

Table S1 from N⁶-Methyladenosine Reader YTHDF1 Promotes Stemness and Therapeutic Resistance in Hepatocellular Carcinoma by Enhancing NOTCH1 Expression

Processed sequencing data of m6A-seq, Rip-seq, Ribo-seq and RNA ...
Jun Yu (9136455), Lina Wang (18159912), Ming Kuang (11108676), Tianhong Su (15130938), Xiao-Xing Li (18159924), Cong Liang (18159915), Shiyan Wang (18159921), Xinyue Zhang (18159903), Yuhong Cai (18159909), Lei Zhou (18159918), Sui Peng (14963510), Yifan Wu (18159906), Lixia Xu (14963516)   +12 more
core   +1 more source

The use of Benzonase to produce ribosome footprints simplifies translational levels quantification by Ribo-seq. [PDF]

NAR Genom Bioinform
Eastman G, Bloom GS, Sotelo-Silveira JR.
europepmc   +1 more source