Results 51 to 60 of about 168,078 (169)
Repurposing Ribo-Seq to provide insights into structured RNAs [PDF]
, 2020 Abstract Ribosome profiling (Ribo-Seq) is a powerful method to study translation in bacteria. However, this method can enrich RNAs that are not bound by ribosomes, but rather, are protected from degradation in another way.
Brayon J. Fremin, Ami S. Bhatt
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RiboNT: A Noise-Tolerant Predictor of Open Reading Frames from Ribosome-Protected Footprints
Life, 2021 Ribo-seq, also known as ribosome profiling, refers to the sequencing of ribosome-protected mRNA fragments (RPFs). This technique has greatly advanced our understanding of translation and facilitated the identification of novel open reading frames (ORFs ...
Bo Song, Mengyun Jiang, Lei Gao
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Fig1A WT and dfrq ribo-seq data for heatmaps
, 2023 Fig1A WT and dfrq ribo-seq data for heatmaps
Kathrina Castillo (13712005) +1 more
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PLoS Computational Biology, 2023 Gene expression is the synthesis of proteins from the information encoded on DNA. One of the two main steps of gene expression is the translation of messenger RNA (mRNA) into polypeptide sequences of amino acids.
Carole Chevalier +11 more
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Compatible levels of editing between Ribo-seq and RNA-seq data.
, 2023 Levels of A-to-I editing in left ventricle DCM patients from RNA-seq (n = 37) and Ribo-seq (n = 30) datasets. Cutoff of ≥ 10 reads for each site. (JPG)
Tomer D. Mann (15203465) +3 more
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Discovering microproteins: making the most of ribosome profiling data
RNA Biology, 2023 Building a reference set of protein-coding open reading frames (ORFs) has revolutionized biological process discovery and understanding. Traditionally, gene models have been confirmed using cDNA sequencing and encoded translated regions inferred using ...
Sonia Chothani +3 more
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, 2021 Ribosome profiling (Ribo-seq) has catalyzed a paradigm shift in our understanding of the translational ‘vocabulary’ of the human genome, discovering thousands of translated open reading frames (ORFs) within long non-coding RNAs and presumed untranslated ...
Schulz, Jana Felicitas +27 more
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Optimization of carbon and energy utilization through differential translational efficiency
Nature Communications, 2018 Microorganisms must regulate allocation of resources in nutrient-limited conditions. Here, the authors combine Ribo-seq, RNA-seq and TSS-seq to study resource allocation in the acetogen C.
Mahmoud M. Al-Bassam +7 more
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Summary of the mRNA-Seq and Ribo-Seq results.
, 2018 Summary of the mRNA-Seq and Ribo-Seq results.
Liping Wei (10166) +5 more
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De novo functional transcriptomics with RNA-seq and Ribo-seq
, 2023 Our genome sequencing and assembly capabilities have hugely increased. However, annotating our genome is still challenging. Genes can produce multiple isoforms, which may have different expression levels and roles. Transcript functions can be elucidated by profiling ribosome positions with the protocol Ribo-seq.
Albanese, Roberto +5 more
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