Results 21 to 30 of about 910,209 (262)
PIMS sequencing extension:a laboratory information management system for DNA sequencing facilities [PDF]
, 2011 Background: Facilities that provide a service for DNA sequencing typically support large numbers of users and experiment types. The cost of services is often reduced by the use of liquid handling robots but the efficiency of such facilities is hampered ...
McPherson, MJ +18 more
core +1 more source
Scientific Reports, 2017 Single molecule sequencing (SMS) platforms enable base sequences to be read directly from individual strands of DNA in real-time. Though capable of long read lengths, SMS platforms currently suffer from low throughput compared to competing short-read ...
Ulrich Schlecht +3 more
doaj +1 more source
Geoseq: a tool for dissecting deep-sequencing datasets [PDF]
, 2010 Gurtowski J, Cancio A, Shah H, et al. Geoseq: a tool for dissecting deep-sequencing datasets. BMC Bioinformatics. 2010;11(1): 506.Background Datasets generated on deep-sequencing platforms have been deposited in various public repositories such as the ...
Gurtowski, James +20 more
core +1 more source
Sparse Sequence-to-Sequence Models [PDF]
Proceedings of the 57th Annual Meeting of the Association for Computational Linguistics, 2019 Sequence-to-sequence models are a powerful workhorse of NLP. Most variants employ a softmax transformation in both their attention mechanism and output layer, leading to dense alignments and strictly positive output probabilities. This density is wasteful, making models less interpretable and assigning probability mass to many implausible outputs.
Ben Peters +2 more
openaire +3 more sources
SEQUENCER: Sequence-to-Sequence Learning for End-to-End Program Repair [PDF]
IEEE Transactions on Software Engineering, 2021 21 pages, 15 ...
Zimin Chen +5 more
openaire +3 more sources
Special features of RAD Sequencing data:implications for genotyping [PDF]
, 2012 Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop ...
Fuentes-Utrilla, Pablo +12 more
core +1 more source
SVhound: detection of regions that harbor yet undetected structural variation
BMC Bioinformatics, 2023 Background Recent population studies are ever growing in number of samples to investigate the diversity of a population or species. These studies reveal new polymorphism that lead to important insights into the mechanisms of evolution, but are also ...
Luis F. Paulin +5 more
doaj +1 more source
Journal of Molecular Pathology, 2021 Given the increase in genomic testing in routine clinical use, there is a growing need for digital technology solutions to assist pathologists, oncologists, and researchers in translating variant calls into actionable knowledge to personalize patient ...
Stephanie J. Yaung, Adeline Pek
doaj +1 more source
Sequence to Sequence -- Video to Text [PDF]
2015 IEEE International Conference on Computer Vision (ICCV), 2015 ICCV 2015 camera-ready.
Subhashini Venugopalan +5 more
openaire +2 more sources
Frontiers in Molecular Biosciences, 2022 Background and Objective: One of the most recent forms of programmed cell death, ferroptosis, is crucial in tumorigenesis. Ferroptosis is characterized by iron-dependent oxidative destruction of cellular membranes following the antioxidant system’s ...
Salem Baldi +11 more
doaj +1 more source