An integrated strategy for target SSR genotyping with toleration of nucleotide variations in the SSRs and flanking regions [PDF]
BMC Bioinformatics, 2021 Background With the broad application of high-throughput sequencing and its reduced cost, simple sequence repeat (SSR) genotyping by sequencing (SSR-GBS) has been widely used for interpreting genetic data across different fields, including population ...
Yongxue Huo +8 more
doaj +2 more sources
PLoS ONEProper cacao (Theobroma cacao L.) plant genotyping is mandatory for the conservation and use of the species genetic resources. A set of 15 international standard SSR markers was assumed as universal cacao genotyping system.
Igor Bidot Martínez +2 more
exaly +2 more sources
Diversity parameter calculation from SSR data with varying and higher ploidy levels: an example on pear (Pyrus ssp.) data [PDF]
BMC Research NotesObjective SSR markers are used for a myriad of genetic analyses, such as genotyping, parentage analysis or genetic structure, due to their high polymorphism, co-dominance and genomic ubiquity.
Lea Broschewitz +3 more
doaj +2 more sources
An Accurate and Efficient Method for Large-Scale SSR Genotyping and Applications. [PDF]
Nucleic Acids Research, 2017 Zhangfeng Hu, Weixiong Zhang, Lifen Gao
exaly +2 more sources
Target SSR-Seq: A Novel SSR Genotyping Technology Associate With Perfect SSRs in Genetic Analysis of Cucumber Varieties [PDF]
Frontiers in Plant Science, 2019 Changlong Wen, Ruixi Han, Bobo Dong
exaly +2 more sources
Two fingerprinting sets for Humulus lupulus based on KASP and microsatellite markers
PLoS ONE, 2022 Verification of clonal identity of hop (Humulus lupulus L.) cultivars within breeding programs and germplasm collections is vital to conserving genetic resources.
Mandie Driskill +9 more
doaj +2 more sources
Frontiers in Plant Science, 2022 Abelmoschus esculentus is a medicinal and edible plant that contains large amounts of active ingredients, including anthocyanins, polysaccharides, flavonoids, and terpenoids.
Xia An +4 more
doaj +1 more source
Microsatellite loci variability in apple cultivars developed at VIR
Труды по прикладной ботанике, генетике и селекции, 2021 Background. Microsatellite (SSR) markers are now widely used both for studying genetic diversity in fruit crop collections, including apple (Malus × domestica Borkh.), and for genotyping individual accessions.
A. V. Shlyavas +4 more
doaj +1 more source
Microsatellite DNA-markers in the study of the gene pool of fruit crops
BIO Web of Conferences, 2020 This article describes development of multilocus SSR-markers sets for genotyping Pyrus, Prunus, and Malus from various genetic collections of the South of Russia.
Suprun Ivan +2 more
doaj +1 more source
High resolution melting analysis is a more sensitive and effective alternative to gel-based platforms in analysis of SSR--an example in citrus. [PDF]
PLoS ONE, 2012 High resolution melting curve analysis (HRM) has been used as an efficient, accurate and cost-effective tool to detect single nucleotide polymorphisms (SNPs) or insertions or deletions (INDELs).
Gaetano Distefano +4 more
doaj +1 more source