Results 11 to 20 of about 135,238 (262)
Global Repeat Map (GRM) Application: Finding All DNA Tandem Repeat Units
Algorithms, 2022 Tandem repeats (TRs) are important components of eukaryotic genomes; they have both structural and functional roles: (i) they form essential chromosome structures such as centromeres and telomeres; (ii) they modify chromatin structure and affect ...
Matko Glunčić +3 more
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Unique Features of Tandem Repeats in Bacteria [PDF]
Journal of Bacteriology, 2020 We found an enigmatic group of noncoding satellites in 85 bacterial genomes with a constant repeat size but variable sequence. This pattern of DNA organization is unique and had not been previously described in bacteria. These findings strongly suggest that satellite size in some bacteria is under strong selective constraints and thus that satellites ...
Subirana Torrent, Juan A. +1 more
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Digital genotyping of macrosatellites and multicopy genes reveals novel biological functions associated with copy number variation of large tandem repeats. [PDF]
PLoS Genetics, 2014 Tandem repeats are common in eukaryotic genomes, but due to difficulties in assaying them remain poorly studied. Here, we demonstrate the utility of Nanostring technology as a targeted approach to perform accurate measurement of tandem repeats even at ...
Manisha Brahmachary +6 more
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Data in Brief, 2019 The datasets included sequences of a control region from Myotis bat mitogenomes. The control region (1706–2005 bp) of the Myotis mitogenomes was divided into three domains similar to that of other mammals, which included the common conserved blocks (ETAS
Md M. Rahman +2 more
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BMC Medical Genomics, 2018 Background The etiology of more than half of all patients with X-linked intellectual disability remains elusive, despite array-based comparative genomic hybridization, whole exome or genome sequencing.
Alena Zablotskaya +4 more
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Microsatellite Stability in STR Analysis Aspergillus fumigatus Depends on Number of Repeat Units
Frontiers in Cellular and Infection Microbiology, 2019 More than a decade ago a short tandem repeat-based typing method was developed for the fungus Aspergillus fumigatus. This STRAf assay is based on the analysis of nine short tandem repeat markers.
Theun de Groot +3 more
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Probabilistic approaches to alignment with tandem repeats [PDF]
Algorithms for Molecular Biology, 2013 Peer-reviewed and presented as part of the 13th Workshop on Algorithms in Bioinformatics (WABI2013)
Michal Nánási +2 more
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LEPStr: A database for Mycobacterium leprae short tandem repeats
Informatics in Medicine Unlocked, 2020 Short tandem repeats are short arrays of nucleotide sequences, and they have vital roles in many biological processes, including modulation of transcription, enhancement of gene expression, adaptation to a particular environment, and link to autosomal ...
Partha Sarathi Mohanty +9 more
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Counting short tandem repeats [PDF]
Nature Methods, 2020 A method using CRISPR–Cas technology, nanopore sequencing and bioinformatics enables quantification of short tandem repeats with high accuracy.
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TRAL: tandem repeat annotation library [PDF]
Bioinformatics, 2015 Abstract Motivation: Currently, more than 40 sequence tandem repeat detectors are published, providing heterogeneous, partly complementary, partly conflicting results. Results: We present TRAL, a tandem repeat annotation library that allows running and parsing of various detection outputs, clustering of redundant or ...
Elke Schaper +8 more
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