Mitochondrial genome of Iodes seguinii reveals repeat-mediated recombination and phylogenetic insights in Icacinaceae. [PDF]
Yu S, Wang M, Gong X, Qin M, Tang M.
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A telomere-to-telomere reference genome assembly of the Hypomesus nipponensis. [PDF]
Zhou Y +8 more
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Centromere evolution in annual and perennial soybeans and its implication for hybridization in cultivated species. [PDF]
Hou J +14 more
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Complete mitochondrial genome sequence data of <i>Pterygoplichthys gibbiceps</i> (Actinopterygii, Loricariidae). [PDF]
Huynh TTT +3 more
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Long-read sequencing identifies complex structural variants in DMD patients. [PDF]
Xie Y, Bao L, Yu X, Liu Y.
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Detection and visualization of tandem repeats in dna sequences
IEEE Transactions on Signal Processing, 2003One conspicuous feature of DNA is the extent to which nucleotide subsequences repeat in the genome. Several strongly repetitive tandem (or contiguous) repeats are known to be associated with genetic diseases, while weaker repetitive structures are thought to be representative of historical events associated with sequence repetition.
Marc Buchner, Suparerk Janjarasjitt
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Tandem sequence repeats in transmembrane channel proteins
Trends in Biochemical Sciences, 1991The flow of ions and small molecules out of and between cells is mediated by various classes of transmembrane proteins. One group of putative channel proteins, including the abundant lens protein MIP, is widely distributed from prokaryotes to vertebrates.
G J, Wistow +2 more
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Greedily assemble tandem repeats for next generation sequences
International Journal of High Performance Computing and Networking, 2019Eukaryotic genomes contain high volumes of intronic and intergenic regions in which repetitive sequences are abundant. These repetitive sequences represent challenges in genomic assignment of short read sequences generated through next generation sequencing and are often excluded in analysis losing invaluable genomic information.
Yongqing Jiang +3 more
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Tandem repeats in proteins: From sequence to structure
Journal of Structural Biology, 2012The bioinformatics analysis of proteins containing tandem repeats requires special computer programs and databases, since the conventional approaches predominantly developed for globular domains have limited success. Here, I survey bioinformatics tools which have been developed recently for identification and proteome-wide analysis of protein repeats ...
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