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Overview of Trends in the Application of Metagenomic Techniques in the Analysis of Human Enteric Viral Diversity in Africa’s Environmental Regimes [PDF]

Viruses, 2018
There has been an increase in the quest for metagenomics as an approach for the identification and study of the diversity of human viruses found in aquatic systems, both for their role as waterborne pathogens and as water quality indicators.
Cecilia Oluseyi Osunmakinde, Ramganesh Selvarajan, Timothy Sibanda, Bhekie B Mamba, Titus A.M Msagati   +4 more
doaj   +2 more sources

A comprehensive reference catalog of human skin DNA virome reveals novel viral diversity and microenvironmental influences. [PDF]

Microbiol Spectr
Li Z, Li S, Han C, Chen Y, Zhen H, Sun Y, Zhou X, Chen Y, Zheng Y, Han L, Krutmann J, Nie C, Wang J, Xia J.   +13 more
europepmc   +2 more sources

Alterations of the gut virome in patients with systemic lupus erythematosus

Frontiers in Immunology, 2023
BackgroundSystemic lupus erythematosus (SLE) is a systemic autoimmune disease that has been linked to the dysbiosis of the gut microbiome and virome.
Changming Chen, Qiulong Yan, Xueming Yao, Shenghui Li, Qingbo Lv, Qingbo Lv, Guangyang Wang, Qin Zhong, Fang Tang, Zhengqi Liu, Ying Huang, Yang An, Jing Zhou, Qiongyu Zhang, Aiqin Zhang, Hayan Ullah, Yue Zhang, Can Liu, Dan Zhu, Hufan Li, Wen Sun, Wukai Ma   +21 more
doaj   +1 more source

Evaluation of the Viral Diversity of Artemia Cysts from Saline Lakes in Kazakhstan Using Viral Metagenomics Analysis

Fishes, 2023
Artemia (brine shrimp) holds significant value as a live feed for larval fish and crustaceans, owing to their distinctive dietary requirements. However, it is vital to acknowledge that Artemia also carries potential risk as a vector of infection.
Marat Kumar, Kobey Karamendin, Zhanara Mazhibayeva, Yermukhammet Kassymbekov, Temirlan Sabyrzhan, Kuanysh Isbekov, Saule Assylbekova, Aidyn Kydyrmanov   +7 more
doaj   +1 more source

Genome Evolution of Two Genetically Homogeneous Infectious Bursal Disease Virus Strains During Passages in vitro and ex vivo in the Presence of a Mutagenic Nucleoside Analog

Frontiers in Microbiology, 2021
The avibirnavirus infectious bursal disease virus (IBDV) is responsible for a highly contagious and sometimes lethal disease of chickens (Gallus gallus). IBDV genetic variation is well-described for both field and live-attenuated vaccine strains, however,
Liliana L. Cubas-Gaona, Alexandre Flageul, Céline Courtillon, Francois-Xavier Briand, Maud Contrant, Stephanie Bougeard, Pierrick Lucas, Hélène Quenault, Aurélie Leroux, Alassane Keita, Michel Amelot, Béatrice Grasland, Yannick Blanchard, Nicolas Eterradossi, Paul Alun Brown, Sébastien Mathieu Soubies   +15 more
doaj   +1 more source

Exploring Tomato Fruit Viromes through Transcriptome Data Analysis

Viruses, 2023
This study delves into the complex landscape of viral infections in tomatoes (Solanum lycopersicum) using available transcriptome data. We conducted a virome analysis, revealing 219 viral contigs linked to four distinct viruses: tomato chlorosis virus ...
Yeonhwa Jo, Hoseong Choi, Bong Choon Lee, Jin-Sung Hong, Sang-Min Kim, Won Kyong Cho   +5 more
doaj   +1 more source

Longitudinal Study of Viral Diversity Associated with Mosquito Species Circulating in Cambodia. [PDF]

Viruses, 2023
Mohamed Ali S, Rakotonirina A, Heng K, Jacquemet E, Volant S, Temmam S, Boyer S, Eloit M.   +7 more
europepmc   +3 more sources

Composition of Eukaryotic Viruses and Bacteriophages in Individuals with Acute Gastroenteritis

Viruses, 2021
Metagenomics based on the next-generation sequencing (NGS) technique is a target-independent assay that enables the simultaneous detection and genomic characterization of all viruses present in a sample. There is a limited amount of data about the virome
Endrya do Socorro Fôro Ramos, Geovani de Oliveira Ribeiro, Fabiola Villanova, Flávio Augusto de Padua Milagres, Rafael Brustulin, Emerson Luiz Lima Araújo, Ramendra Pati Pandey, V. Samuel Raj, Xutao Deng, Eric Delwart, Adriana Luchs, Antonio Charlys da Costa, Élcio Leal   +12 more
doaj   +1 more source

SIV Evolutionary Dynamics in Cynomolgus Macaques during SIV-Mycobacterium tuberculosis Co-Infection

Viruses, 2021
Co-infection with Mycobacterium tuberculosis (Mtb) and human immunodeficiency virus (HIV) is a worldwide public health concern, leading to worse clinical outcomes caused by both pathogens.
Kaho H. Tisthammer, Christopher Kline, Tara Rutledge, Collin R. Diedrich, Sergio Ita, Philana Ling Lin, Zandrea Ambrose, Pleuni S. Pennings   +7 more
doaj   +1 more source

Exploring Virome Diversity in Public Data in South America as an Approach for Detecting Viral Sources From Potentially Emerging Viruses

Frontiers in Genetics, 2022
The South American continent presents a great diversity of biomes, whose ecosystems are constantly threatened by the expansion of human activity. The emergence and re-emergence of viral populations with impact on the human population and ecosystem have ...
Fernando G. Mazur, Leandro M. Morinisi, Junior Olímpio Martins, Pedro Pontes Bueno Guerra, Caio C. M. Freire   +4 more
doaj   +1 more source