Results 31 to 40 of about 21,570 (220)
Frontiers in Microbiology, 2022 The 24-loci mycobacterial interspersed repetitive unit-variable number tandem repeat (MIRU-VNTR) genotyping has been used as an international standard method for Mycobacterium tuberculosis (Mtb) genotyping. However, different optimized VNTR loci sets for
Shima Hadifar +15 more
doaj +1 more source
trfermikit: a tool to discover VNTR-associated deletions [PDF]
Bioinformatics, 2021 AbstractSummaryWe present trfermikit, a software tool designed to detect deletions larger than 50 bp occurring in Variable Number Tandem Repeats using Illumina DNA sequencing reads. In such regions, it achieves a better tradeoff between sensitivity and false discovery than a state-of-the-art structural variation caller, Manta and complements it by ...
Peter McHale, Aaron R. Quinlan
openaire +2 more sources
Инфекция и иммунитет, 2014 . Current genome evolution of Mycobacterium tuberculosis is marked by virtual absence of the lateral gene transfer leading to the clonal population of this species consisting of separate genetic families. Standard typing method of M. tuberculosis (IS6110-
I. V. Mokrousov
doaj +1 more source
PeerJ, 2018 Background Tuberculosis (TB) resulted in an estimated 1.7 million deaths in the year 2016. The disease is caused by the members of Mycobacterium tuberculosis complex, which includes Mycobacterium tuberculosis, Mycobacterium bovis and other closely ...
Rahim Rajwani, Sheeba Shehzad, G. Siu
semanticscholar +1 more source
Yersinia pseudotuberculosis Typing Using Multi-Locus Variable-Number Tandem Repeat Analysis
Проблемы особо опасных инфекций, 2015 Estimated has been efficacy of MLVA25 method, used for differentiation and clusterization of Yersinia pestis strains, in reference to Yersinia pseudotuberculosis strains, as well as the search of Y. pseudotuberculosis strains mostly closely related to Y.
V. V. Evseeva +3 more
doaj +1 more source
Characterization of the COL2A1 VNTR Polymorphism
Genomics, 1993 The variable number of tandem repeat (VNTR) region 3' to the collagen type II gene (COL2A1) was amplified in vitro by the polymerase chain reaction. Subsequent high-resolution gel electrophoresis showed that the five earlier reported alleles could be further subtyped.
E S, Berg, B, Olaisen
openaire +2 more sources
Extreme enrichment of VNTR-associated polymorphicity in human subtelomeres: genes with most VNTRs are predominantly expressed in the brain [PDF]
Translational Psychiatry, 2020 AbstractThe human genome harbors numerous structural variants (SVs) which, due to their repetitive nature, are currently underexplored in short-read whole-genome sequencing approaches. Using single-molecule, real-time (SMRT) long-read sequencing technology in combination with FALCON-Unzip, we generated a de novo assembly of the diploid genome of a 115 ...
Linthorst, Jasper +6 more
openaire +4 more sources
Проблемы особо опасных инфекций, 2013 Set-up is database containing characteristics of variable tandem repeats, oligo-nucleotide primers and probes of the genomes of the strains bacterial and viral infections agents of the I-II pathogenicity groups.
Yu. I. Yashechkin +3 more
doaj +1 more source
Проблемы особо опасных инфекций, 2011 Presented are the results of B. anthracis molecular typing of in the scope of work of the Reference center for the anthrax agent monitoring. Summarized is the experience of genotyping application in epidemiological investigation of anthrax outbreaks ...
A. G. Ryazanova +4 more
doaj +1 more source
Journal of Biological Chemistry, 2016 INS-VNTR (insulin-variable number of tandem repeats) and AIRE (autoimmune regulator) have been associated with the modulation of insulin gene expression in thymus, which is essential to induce either insulin tolerance or the development of insulin ...
A. E. Sparks +3 more
semanticscholar +1 more source