Results 41 to 50 of about 175,856 (292)
SICLE: A high-throughput tool for extracting evolutionary relationships from phylogenetic trees
, 2016 We present the phylogeny analysis software SICLE (Sister Clade Extractor), an easy-to-use, high- throughput tool to describe the nearest neighbors to a node of interest in a phylogenetic tree as well as the support value for the relationship.
DeBlasio, Dan, Wiscaver, Jennifer
core +2 more sources
Archaeal diversity in deep-sea sediments estimated by means of different Terminal-Restriction Fragment Length Polymorphisms (T-RFLP) protocols [PDF]
, 2009 Despite the increasing recognition of the quantitative importance of Archaea in all marine systems, the protocols for a rapid estimate of Archaeal diversity patterns in deep-sea sediments have been only poorly tested yet.
Danovaro, Roberto +3 more
core +1 more source
Methanogenic archaea in peatlands [PDF]
FEMS Microbiology Letters, 2020 ABSTRACT Methane emission feedbacks in wetlands are predicted to influence global climate under climate change and other anthropogenic stressors. Herein, we review the taxonomy and physiological ecology of the microorganisms responsible for methane production in peatlands.
Suzanna L. Bräuer +3 more
openaire +2 more sources
mBio, 2020 Unlike all other archaeal lineages, ammonia-oxidizing archaea (AOA) of the phylum Thaumarchaeota are widespread and abundant in all moderate and oxic environments on Earth. The evolutionary adaptations that led to such unprecedented ecological success of
Sophie S. Abby +2 more
doaj +1 more source
Methanogenic \u3cem\u3eArchaea\u3c/em\u3e and human periodontal disease [PDF]
, 2004 Archaea have been isolated from the human colon, vagina, and oral cavity, but have not been established as causes of human disease. In this study, we reveal a relationship between the severity of periodontal disease and the relative abundance of archaeal
Armitage, Gary C. +5 more
core +1 more source
Estuarine Nitrifiers: New Players, Patterns and Processes [PDF]
, 2010 Ever since the first descriptions of ammonia-oxidizing Bacteria by Winogradsky in the late 1800s, the metabolic capability of aerobic ammonia oxidation has been restricted to a phylogenetically narrow group of bacteria.
Bernhard, Anne E, Bollmann, Annette
core +2 more sources
AAA+ protein unfoldases—the Moirai of the proteome
FEBS Letters, EarlyView.AAA+ unfoldases are essential molecular motors that power protein degradation and disaggregation. This review integrates recent cryo‐electron microscopy (cryo‐EM) structures and single‐molecule biophysical data to reconcile competing models of substrate translocation.
Stavros Azinas, Marta Carroni
wiley +1 more source
A Well-Conserved Archaeal B-Family Polymerase Functions as an Extender in Translesion Synthesis
mBio, 2022 B-family DNA polymerases (PolBs) of different groups are widespread in Archaea, and different PolBs often coexist in the same organism. Many of these PolB enzymes remain to be investigated.
Xu Feng +9 more
doaj +1 more source
Short-term variability in the sedimentary BIT index of Lake Challa, East Africa over the past 2200 years : validating the precipitation proxy [PDF]
, 2015 . The branched vs. isoprenoid index of tetraethers (BIT index) in Lake Challa sediments has been applied as a monsoon precipitation proxy on the assumption that the primary source of branched tetraether lipids (brGDGTs) was soil washed in from the lake's
Buckles, LK +4 more
core +1 more source
Transcription in Archaea [PDF]
Proceedings of the National Academy of Sciences, 1999 Using the sequences of all the known transcription-associated proteins from Bacteria and Eucarya (a total of 4,147), we have identified their homologous counterparts in the four complete archaeal genomes. Through extensive sequence comparisons, we establish the presence of 280 predicted transcription factors or transcription-associated ...
N C, Kyrpides, C A, Ouzounis
openaire +2 more sources