Variation in the strength of selected codon usage bias among bacteria [PDF]
, 2005 Among bacteria, many species have synonymous codon usage patterns that have been influenced by natural selection for those codons that are translated more accurately and/or efficiently. However, in other species selection appears to have been ineffective.
Sharp, P M +5 more
core +1 more source
Unexpected correlations between gene expression and codon usage bias from microarray data for the whole Escherichia coli K-12 genome [PDF]
, 2003 Escherichia coli has long been regarded as a model organism in the study of codon usage bias (CUB). However, most studies in this organism regarding this topic have been computational or, when experimental, restricted to small datasets; particularly poor
Savva, Renos +2 more
core +1 more source
Codon-anticodon recognition patterns and codon usage in the chloroplast genome of I. rubescens.
, 2022 Codon-anticodon recognition patterns and codon usage in the chloroplast genome of I. rubescens.
Conglong Lian (3563201) +6 more
core +1 more source
Codon usage in nucleopolyhedroviruses
Journal of General Virology, 2000 Phylogenetic analyses based on baculovirus polyhedrin nucleotide and amino acid sequences revealed two major nucleopolyhedrovirus (NPV) clades, designated Group I and Group II. Subsequent phylogenetic analyses have revealed three Group II subclades, designated A, B and C.
David B, Levin, Beatrixe, Whittome
openaire +2 more sources
A code within the genetic code: codon usage regulates co-translational protein folding
Cell Communication and Signaling, 2020 The genetic code is degenerate, and most amino acids are encoded by two to six synonymous codons. Codon usage bias, the preference for certain synonymous codons, is a universal feature of all genomes examined.
Yi Liu
doaj +1 more source
Fine-Tuning Translation Kinetics Selection as the Driving Force of Codon Usage Bias in the Hepatitis A Virus Capsid [PDF]
, 2010 Hepatitis A virus (HAV), the prototype of genus Hepatovirus, has several unique biological characteristics that distinguish it from other members of the Picornaviridae family.
Pintó Solé, Rosa María +14 more
core +1 more source
Codon-anticodon recognition patterns and codon usage of the A. venetum chloroplast genome.
, 2022 Codon-anticodon recognition patterns and codon usage of the A. venetum chloroplast genome.
Deyu Cai (11592160) +4 more
core +1 more source
BMC Research Notes, 2012 Background Synonymous codon usage bias has typically been correlated with, and attributed to translational efficiency. However, there are other pressures on genomic sequence composition that can affect codon usage patterns such as mutational biases. This
O'Connell Mary J +6 more
doaj +1 more source
Codon Usage Domains over Bacterial Chromosomes [PDF]
, 2006 The geography of codon bias distributions over prokaryotic genomes and its impact upon chromosomal organization are analyzed. To this aim, we introduce a clustering method based on information theory, specifically designed to cluster genes according to ...
Danchin, Antoine +16 more
core +2 more sources
Analysis of synonymous codon usage in Hepatitis A virus
Virology Journal, 2011 Background Hepatitis A virus is the causative agent of type A viral hepatitis, which causes occasional acute hepatitis. Nevertheless, little information about synonymous codon usage pattern of HAV genome in the process of its evolution is available.
Ma Lina +8 more
doaj +1 more source