Results 11 to 20 of about 94,067 (257)

A genome-phenome association study in native microbiomes identifies a mechanism for cytosine modification in DNA and RNA

open access: yeseLife, 2021
Shotgun metagenomic sequencing is a powerful approach to study microbiomes in an unbiased manner and of increasing relevance for identifying novel enzymatic functions.
Weiwei Yang   +9 more
doaj   +1 more source

Mammalian DNA cytosine‐5 methyltransferase interacts with p23 protein [PDF]

open access: yesFEBS Letters, 1996
In higher eukaryotic genomes, methylated cytosine residues (m5C) are distributed in heritable, cell‐type‐specific patterns, which are believed to be involved in the control of gene expression, developmental regulation and genomic imprinting. These methylation patterns are established and maintained by DNA cytosine‐5 methyltransferase (MTase), a ∼1500 ...
Zhang, Xiaoyan, Verdine, Gregory L.
openaire   +2 more sources

DNMT1 (DNA (cytosine-5-)-methyltransferase 1)) [PDF]

open access: yesAtlas of Genetics and Cytogenetics in Oncology and Haematology, 2011
Review on DNMT1 (DNA (cytosine-5-)-methyltransferase 1)), with data on DNA, on the protein encoded, and where the gene is implicated.
Arai, E, Kanai, Y
openaire   +2 more sources

Mutagenic and cytotoxic properties of oxidation products of 5-methylcytosine revealed by next-generation sequencing.

open access: yesPLoS ONE, 2013
5-methylcytosine (5-mC) can be sequentially oxidized to 5-hydroxymethylcytosine (5-hmC), 5-formylcytosine (5-foC), and finally to 5-carboxylcytosine (5-caC), which is thought to function in active DNA cytosine demethylation in mammals. Although the roles
Xi-Wen Xing   +6 more
doaj   +1 more source

Systematic prediction of DNA shape changes due to CpG methylation explains epigenetic effects on protein–DNA binding

open access: yesEpigenetics & Chromatin, 2018
Background DNA shape analysis has demonstrated the potential to reveal structure-based mechanisms of protein–DNA binding. However, information about the influence of chemical modification of DNA is limited.
Satyanarayan Rao   +5 more
doaj   +1 more source

Changes in liver cell DNA methylation status in diabetic mice affect its FT-IR characteristics. [PDF]

open access: yesPLoS ONE, 2014
Lower levels of cytosine methylation have been found in the liver cell DNA from non-obese diabetic (NOD) mice under hyperglycemic conditions. Because the Fourier transform-infrared (FT-IR) profiles of dry DNA samples are differently affected by DNA base ...
Benedicto de Campos Vidal   +2 more
doaj   +1 more source

Protein-facilitated base flipping in DNA by cytosine-5-methyltransferase [PDF]

open access: yesProceedings of the National Academy of Sciences, 2002
DNA methylation, various DNA repair mechanisms, and possibly early events in the opening of DNA as required for transcription and replication are initiated by flipping of a DNA base out of the DNA double helix. The energetics and structural mechanism of base flipping in the presence of the DNA-processing enzyme, cytosine 5 ...
Niu, Huang   +2 more
openaire   +2 more sources

Detection of early stage pancreatic cancer using 5-hydroxymethylcytosine signatures in circulating cell free DNA

open access: yesNature Communications, 2020
Circulating DNA detected in plasma can be used for diagnostic purposes. Here, the authors show that the 5-hydroxymethyl cytosine biomarker from plasma-derived cell free DNA can be used to detect early stage pancreatic cancer.
Gulfem D. Guler   +15 more
doaj   +1 more source

Intramolecular folding in human ILPR fragment with three C-rich repeats. [PDF]

open access: yesPLoS ONE, 2012
Enrichment of four tandem repeats of guanine (G) rich and cytosine (C) rich sequences in functionally important regions of human genome forebodes the biological implications of four-stranded DNA structures, such as G-quadruplex and i-motif, that can form
Soma Dhakal   +4 more
doaj   +1 more source

Engineering the DNA cytosine-5 methyltransferase reaction for sequence-specific labeling of DNA [PDF]

open access: yesNucleic Acids Research, 2012
DNA methyltransferases catalyse the transfer of a methyl group from the ubiquitous cofactor S-adenosyl-L-methionine (AdoMet) onto specific target sites on DNA and play important roles in organisms from bacteria to humans. AdoMet analogs with extended propargylic side chains have been chemically produced for methyltransferase-directed transfer of ...
G. Lukinavicius   +4 more
openaire   +4 more sources

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