Towards precision quantification of contamination in metagenomic sequencing experiments
Microbiome, 2019 Metagenomic next-generation sequencing (mNGS) experiments involving small amounts of nucleic acid input are highly susceptible to erroneous conclusions resulting from unintentional sequencing of occult contaminants, especially those derived from ...
M. S. Zinter +4 more
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Evolutionary and structural analysis of the cytochrome c oxidase subunit I (COI) gene from Haematobia irritans, Stomoxys calcitrans and Musca domestica (Diptera : Muscidae) mitochondrial DNA [PDF]
, 2015 This work describes the molecular characterization of the cytochrome c oxidase subunit I (COI) gene of the mitochondrial DNA from three species of great medical and veterinary importance: the horn fly, Haematobia irritans, the stable fly, Stomoxys ...
Lessinger, AC +2 more
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High-Throughput DNA Analysis Platform Based on an Optofluidic Ring Resonator Laser
Applied Sciences, 2022 We demonstrate an optofluidic laser using DNA microdroplets, an intercalating dye, and a glass capillary ring resonator. Only the target DNA emits the laser signal, while the non-target DNA, including those with single-base mismatches, exhibits zero ...
Chan Seok Jun, Wonsuk Lee
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Preferential access to genetic information from endogenous hominin ancient DNA and accurate quantitative SNP-typing via SPEX [PDF]
, 2009 The analysis of targeted genetic loci from ancient, forensic and clinical samples is usually built upon polymerase chain reaction (PCR)-generated sequence data.
Endicott, Phillip +8 more
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Detection and characterization of tomato leaf curl New Delhi virus association with mosaic disease of ivy gourd (Coccinia grandis (L.) Voigt) in North India [PDF]
Archives of Biological Sciences, 2018 Sixteen ivy gourd (Coccinia grandis (L.) Voigt) plant samples showing severe mosaic symptoms were collected from New Delhi and Varanasi (Uttar Pradesh) in India. Begomovirus infection was confirmed by PCR using begomovirusspecific primers.
Venkataravanappa Venkataravanappa +4 more
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Microorganisms, 2022 Precise classification of bacteria facilitates prediction of their ecological niche. The genus Enterobacter includes pathogens of plants and animals but also beneficial bacteria that may require reclassification.
Ge Gao +8 more
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Google Matrix Analysis of DNA Sequences
PLoS ONE, 2013 latex, 11 ...
Kandiah, Vivek, Shepelyansky, Dima
openaire +5 more sources
GST-PRIME: a genome-wide primer design software for the generation of gene sequence tags [PDF]
, 2001 The availability of sequenced genomes has generated a need for experimental approaches that allow the simultaneous analysis of large, or even complete, sets of genes.
Varotto, Claudio +3 more
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Sequence analysis of four caprine mitochondria DNA lineages
Italian Journal of Animal Science, 2012 The complete mitochondrial DNA (mtDNA) (16640bp in length) was sequenced from four Chinese goat lineages representing the four major mtDNA haplogroups in goats. A total of 124 single nucleotide polymorphisms (SNPs) were found in encoding regions, and the
Yue-Hui Ma +4 more
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Genomic analysis of sequence-dependent DNA curvature in Leishmania. [PDF]
PLoS ONE, 2013 Leishmania major is a flagellated protozoan parasite of medical importance. Like other members of the Trypanosomatidae family, it possesses unique mechanisms of gene expression such as constitutive polycistronic transcription of directional gene clusters,
Pablo Smircich +3 more
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