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New Generation of Clinical Epigenetics Analysis and Diagnosis for Precision Medicine [PDF]

open access: yesDiagnostics
Following the application of epigenetic and epigenomics research into tumor diseases, cardiovascular disease, diabetes, hereditary diseases, and rare diseases, in vitro diagnostics (IVD) epigenetic and epigenomics are increasingly employed for those ...
Pengtao Song, Biaoru Li
doaj   +2 more sources

EpiCHAOS: a metric to quantify epigenomic heterogeneity in single-cell data [PDF]

open access: yesGenome Biology
Epigenetic heterogeneity is a fundamental property of biological systems and is recognized as a potential driver of tumor plasticity and therapy resistance.
Katherine Kelly   +4 more
doaj   +2 more sources

Plasma cell free DNA methylation markers for hepatocellular carcinoma surveillance in patients with cirrhosis: a case control study

open access: yesBMC Gastroenterology, 2021
Background Hepatocellular carcinoma (HCC) is the leading cause of death in patients with cirrhosis, primarily due to failed early detection. HCC screening is recommended among individuals with cirrhosis using biannual abdominal ultrasound, for earlier ...
Jörn Lewin   +13 more
doaj   +1 more source

Epigenetic control of Epstein–Barr virus transcription – relevance to viral life cycle? [PDF]

open access: yes, 2013
DNA methylation normally leads to silencing of gene expression but Epstein–Barr virus (EBV) provides an exception to the epigenetic paradigm. DNA methylation is absolutely required for the expression of many viral genes.
Sinclair, Alison J
core   +10 more sources

Titration-based normalization of antibody amount improves consistency of ChIP-seq experiments

open access: yesBMC Genomics, 2023
Chromatin immunoprecipitation (ChIP) is an antibody-based approach that is frequently utilized in chromatin biology and epigenetics. The challenge in experimental variability by unpredictable nature of usable input amounts from samples and undefined ...
Ariel Caride   +11 more
doaj   +1 more source

Influence of lifestyle factors with the outcome of menstrual disorders among adolescents and young women in West Bengal, India

open access: yesScientific Reports, 2023
Menstruation is a natural phenomenon for every female, starting from adolescents to menopausal age. Any disturbances in menstrual patterns can eventually affect one’s physical as well as psychological health which in turn hamper the quality of life of ...
Shrinjana Dhar   +2 more
doaj   +1 more source

Extracellular vesicles from subjects with COPD modulate cancer initiating cells phenotype through HIF-1α shuttling

open access: yesCell Death and Disease, 2023
Chronic obstructive pulmonary disease (COPD) is a risk factor for lung cancer development. COPD induces activation of hypoxia-induced signaling, causing remodeling of surrounding microenvironmental cells also modulating the release and cargo of their ...
Ilaria Petraroia   +10 more
doaj   +1 more source

Epigenomics Scientific Big Data Workflow Scheduling for Cancer Diagnosis in Health Care Using Heterogeneous Computing Environment

open access: yesBrazilian Archives of Biology and Technology, 2022
DNA methylation and Histone are the main constituents to oversee the stable maintenance of cellular phenotypes. Any abnormalities in these components could cause cancer development and, therefore, must be potentially diagnostic.
Wakar Ahmad   +3 more
doaj   +1 more source

RNA N6-methyladenosine methylation and skin diseases

open access: yesAutoimmunity, 2023
Skin diseases are global health issues caused by multiple pathogenic factors, in which epigenetics plays an invaluable role. Post-transcriptional RNA modifications are important epigenetic mechanism that regulate gene expression at the genome-wide level.
Yaqin Yu   +6 more
doaj   +1 more source

An automated high throughput solution for DNA extraction and bisulfite-conversion from high volume liquid biopsy specimens: sample preparation for epigenetic analysis

open access: yesBMC Research Notes, 2019
Objective DNA methylation analysis via real-time PCR or other analytical techniques requires purified bisulfite converted DNA. We report on an automated high throughput solution for DNA extraction, bisulfite-conversion, and purification of 96 samples ...
Sebastian Rausch   +4 more
doaj   +1 more source

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