Development of simple sequence repeat markers for sugarcane from data mining of expressed sequence tags [PDF]
Frontiers in Plant Science, 2023 Sugarcane (Saccharum spp. hybrids) is a worldwide acclaimed important agricultural crop used primarily for sugar production and biofuel. Sugarcane’s genetic complexity, aneuploidy, and extreme heterozygosity make it a challenging crop in developing ...
Huahao Jiang +8 more
doaj +2 more sources
Identification of putative miRNAs from Expressed Sequence Tags of Gnetum gnemon L. and their cross-kingdom targets in human [PDF]
BioTechnologia, 2021 Wild edible plants are often found to be rich sources of nutrients and medicinally beneficial compounds with pharmacological activities. Gnetum gnemon is a nutritionally important plant and a popular food source in parts of Assam and North-East India ...
Debasish B. Krishnatreya +6 more
doaj +2 more sources
Computational identification of microRNAs and their targets in Catharanthus roseus expressed sequence tags. [PDF]
Genom Data, 2013 No study has been performed on identifying microRNAs (miRNAs) and their targets in the medicinal plant, Catharanthus roseus. In the present study, using the comparative genomics approach, we have predicted two potential C. roseus miRNAs.
Pani A, Mahapatra RK.
europepmc +2 more sources
Expressed sequence tags for genes: a review [PDF]
Genetics Selection Evolution, 1998 Expressed sequence tags (ESTs) are partial sequences from the extremities of complementary DNA (resulting from a single pass sequencing of clones from cDNA libraries, and different ESTs can be obtained from one gene. Sequence information from ESTs can be used for deciphering the function and the organisation of the genome.
Clouscard-Martinato Catherine +4 more
doaj +5 more sources
prot4EST: Translating Expressed Sequence Tags from neglected genomes [PDF]
BMC Bioinformatics, 2004 Background The genomes of an increasing number of species are being investigated through generation of expressed sequence tags (ESTs). However, ESTs are prone to sequencing errors and typically define incomplete transcripts, making downstream annotation ...
Blaxter Mark L, Wasmuth James D
doaj +4 more sources
Analysis of the Asian seabass transcriptome based on expressed sequence tags. [PDF]
DNA Res, 2011 Analysis of transcriptomes is of great importance in genomic studies. Asian seabass is an important fish species. A number of genomic tools in it were developed, while large expressed sequence tag (EST) data are lacking.
Xia JH, He XP, Bai ZY, Lin G, Yue GH.
europepmc +2 more sources
Data from expressed sequence tags from the organs and embryos of parthenogenetic Haemaphysalis longicornis [PDF]
BMC Research Notes, 2021 Objectives Haemaphysalis longicornis is the most important tick species in Japan and has a wide range of vector capacity. Due to its veterinary and medical importance, this tick species has been used as a model for tick/vector biological studies.
Rika Umemiya-Shirafuji +13 more
doaj +2 more sources
PASSIOMA: Exploring Expressed Sequence Tags during Flower Development in Passiflora spp. [PDF]
Comp Funct Genomics, 2012 The genus Passiflora provides a remarkable example of floral complexity and diversity. The extreme variation of Passiflora flower morphologies allowed a wide range of interactions with pollinators to evolve.
Cutri L, Dornelas MC.
europepmc +2 more sources
Comprehensive functional analyses of expressed sequence tags in common wheat (Triticum aestivum). [PDF]
DNA Res, 2012 About 1 million expressed sequence tag (EST) sequences comprising 125.3 Mb nucleotides were accreted from 51 cDNA libraries constructed from a variety of tissues and organs under a range of conditions, including abiotic stresses and pathogen challenges ...
Manickavelu A +11 more
europepmc +2 more sources
Generation and analysis of expressed sequence tags in the extreme large genomes Lilium and Tulipa. [PDF]
BMC Genomics, 2012 BackgroundBulbous flowers such as lily and tulip (Liliaceae family) are monocot perennial herbs that are economically very important ornamental plants worldwide.
Shahin A +6 more
europepmc +2 more sources