Results 11 to 20 of about 563,469 (347)

Systematic Functional Annotation Workflow for Insects

Insects, 2022
Next-generation sequencing has revolutionized entomological study, rendering it possible to analyze the genomes and transcriptomes of non-model insects.
Hidemasa Bono, Takuma Sakamoto, Takeya Kasukawa, Hiroko Tabunoki   +3 more
doaj   +3 more sources

Combining multiple functional annotation tools increases coverage of metabolic annotation [PDF]

BMC Genomics, 2018
Background Genome-scale metabolic modeling is a cornerstone of systems biology analysis of microbial organisms and communities, yet these genome-scale modeling efforts are invariably based on incomplete functional annotations. Annotated genomes typically
Marc Griesemer, Jeffrey A. Kimbrel, Carol E. Zhou, Ali Navid, Patrik D’haeseleer   +4 more
doaj   +3 more sources

Functional Annotation Workflow for Fungal Transcriptomes [PDF]

Journal of Fungi
Although RNA sequencing (RNA-seq) enables rapid transcriptome profiling, functional annotation of fungal transcriptomes remains challenging. Existing tools prioritize broad taxonomic coverage, and reference genomes are scarce for non-model species.
Nagisa Morihara, Hidemasa Bono
doaj   +2 more sources

Editorial: Functional Annotation of Animal Genomes [PDF]

Frontiers in Genetics, 2021
Editorial on the Research Topic Functional Annotation of Farm Animal Genomes All fields of biology have been greatly influenced by the generation of complete and well-annotated genome assemblies. This impact is most apparent with the findings and resulting applications from the Human Genome Project (HGP), which has transformed biomedical science.
Amanda Jane Chamberlain, Hans H. Cheng, Elisabetta Giuffra, Christa Kuehn, Christopher K. Tuggle, Huaijun Zhou   +5 more
doaj   +5 more sources

Functional annotation of hierarchical modularity.

PLoS ONE, 2012
In biological networks of molecular interactions in a cell, network motifs that are biologically relevant are also functionally coherent, or form functional modules.
Kanchana Padmanabhan, Kuangyu Wang, Nagiza F Samatova   +2 more
doaj   +4 more sources

Annotating microbial functions with ProkFunFind

mSystems
Analyzing microbial genomes has become an essential part of microbiology research, giving valuable insights into the functions and evolution of microbial species.
Keith Dufault-Thompson, Xiaofang Jiang
doaj   +3 more sources

Comparing functional annotation analyses with Catmap [PDF]

BMC Bioinformatics, 2004
Background Ranked gene lists from microarray experiments are usually analysed by assigning significance to predefined gene categories, e.g., based on functional annotations. Tools performing such analyses are often restricted to a category score based on
Krogh Morten, Edén Patrik, Breslin Thomas   +2 more
doaj   +3 more sources

Facilitating functional annotation of chicken microarray data [PDF]

BMC Bioinformatics, 2009
Background Modeling results from chicken microarray studies is challenging for researchers due to little functional annotation associated with these arrays.
Gresham Cathy R, Kumar Ranjit, Buza Teresia J, Burgess Shane C, McCarthy Fiona M   +4 more
doaj   +4 more sources

Genome-wide functional annotation of variants: a systematic review of state-of-the-art tools, techniques and resources [PDF]

Frontiers in Pharmacology
The recent advancement of sequencing technologies marks a significant shift in the character and complexity of the digital genomic data universe, encompassing diverse types of molecular data, screened through manifold technological platforms. As a result,
Eleftherios Pilalis, Dimitrios Zisis, Christina Andrinopoulou, Theodora Karamanidou, Maria Antonara, Thanos G. Stavropoulos, Aristotelis Chatziioannou, Aristotelis Chatziioannou   +7 more
doaj   +2 more sources

Student biocuration projects as a learning environment [version 2; peer review: 2 approved]

F1000Research, 2022
Background: Bioinformatics is becoming an essential tool for the majority of biological and biomedical researchers. Although bioinformatics data is exploited by academic and industrial researchers, limited focus is on teaching this area to undergraduates,
Ruth C. Lovering, Katherine E. Thurlow, Sandra De Miranda Pinheiro   +2 more
doaj   +1 more source