Results 41 to 50 of about 3,702,794 (289)

OntoTag - A Linguistic and Ontological Annotation Model Suitable for the Semantic Web [PDF]

, 2012
OntoTag - A Linguistic and Ontological Annotation Model Suitable for the Semantic Web 1. INTRODUCTION. LINGUISTIC TOOLS AND ANNOTATIONS: THEIR LIGHTS AND SHADOWS Computational Linguistics is already a consolidated research area.
Pareja-Lora, A.
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The first draft genome assembly and data analysis of the Malaysian mahseer (Tor tambroides)

Aquaculture and Fisheries, 2023
The Malaysian mahseer (Tor tambroides), one of the most valuable freshwater fish in the world, is mainly targeted for human consumption. The mitogenomic data of this species is available to date, but the genomic information is still lacking.
Melinda Mei Lin Lau, Leonard Whye Kit Lim, Hung Hui Chung, Han Ming Gan   +3 more
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Curated genome annotation of Oryza sativa ssp. japonica and comparative genome analysis with Arabidopsis thaliana [PDF]

, 2007
We present here the annotation of the complete genome of rice Oryza sativa L. ssp. japonica cultivar Nipponbare. All functional annotations for proteins and non-protein-coding RNA (npRNA) candidates were manually curated.
Hosokawa, S., Kawashima, H., Zhao, Q., Kawahara, Y., Zhao, Q., Imanishi, T., Haberer, G., Seki, M., Komatsu, S., Thongjuea, S., Oota, S., Wang, A., Takeda, J.-i., Bureau, T., Ikawa, H., Hokari, H., Zhang, H., Schoof, H., Yamamoto, N., Khurana, J.P., Tanaka, T., Tanino, M., Thongjuea, S., Sakai, Y., Ito, Y., Tanaka, T., Kawamura, T., Antonio, B. A., Harada, E., Messing, J., Saichi, N., Fuks, G., Hirochika, H., Koyanagi, K. O., Sato, Y., Sakai, H., Tyagi, A. K., Bureau, T., Kawamura, T., Aono, H., Ohyanagi, H., Burr, B., Barrero, R.A., Okido, T., Tsugane, M., Shimizu, Y., Osato, N., Hilton, P.B., Wang, A., Yu, Y., Hoen, D., Matsuya, A., Barrero, R. A., Bruskiewich, R., Nam, J., Apweiler, R., Shibata, M., Miyao, A., Miyao, A., Schoof, H., Fujii, Y., Quetier, F., Lieberherr, D., Nurimoto, S., Burr, B., Hiraki, A.T., Sakai, H., Tatusova, T., Hoen, D., Sakata, K., Sato, F., Lin, Y. C., Sakurai, T., Higo, K., Lonsdale, D., Nurimoto, S., Hiraki, A. T., Habara, T., Shimizu, Y., Ito, Y., Lin, Y-C, Tsugane, M., McCombie, W. R., Okido, T., Namiki, N., Kawahara, Y., Apweiler, R., Mulder, N., Kawashima, H., Matsumoto, T., Quetier, F., Osato, N., Hsing, Y., Hilton, P. B., Shinso, Y., Aono, H., Ohyanagi, H., Yamasaki, C., Sakai, Y., Yamaguchi, K., Vanavichit, A., Kubooka, H., O'Donovan, C., Komatsu, S., Matsuya, A., Fuks, G., Lieberherr, D., Antonio, B.A., Yamamoto, N., OOta, S., Hokari, H., Sakata, K., Raghuvanshi, S., Jaiswal, P., Burr, F., Hsing, Y. I., Smith-White, B., Khurana, J. P., O'Donovan, C., Vanavichit, A., De Oliveira, A. C., Habara, T., Ikawa, H., Shibata, M., Bruskiewich, R., Koyanagi, K.O., Gojobori, T., Harada, E., Raghuvanshi, S., Hosokawa, S., Sato, F., Seki, M., Higo, K., Yamamoto, M., Palmer, L.E., Kubooka, H., Kikuchi, S., Sasaki, T., Yu, Y., Han, B., Nam, J., Costa de Oliveira, A., Palmer, L. E., Lonsdale, D., McCombie, W.R., Shinso, Y., Kanno, M., Tatusova, T., Yamasaki, C., Haberer, G., Numa, H., Yamaguchi, K., Hirochika, H., Ikeo, K., Ikeo, K., Todokoro, F., Burr, F., Zhang, H., Singh, N. K., Kanno, M., Smith-White, B., Wing, R.A., Sato, Y., Nagamura, Y., Wing, R. A., Fujii, Y., Jaiswal, P., Messing, J., Kikuchi, S., Saichi, N., Namiki, N., Tyagi, A.K., Itoh, T., Tanino, M., Itoh, T., Imanishi, T., Sakurai, T., Todokoro, F., Mulder, N., Matsumoto, T., Singh, N.K., Nagamura, Y., Yamamoto, M., Shinozaki, K., Takeda, J. I., Han, B., Sasaki, T., Numa, H., Shinozaki, K., Gojobori, T.   +189 more
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A Semantic Web Annotation Tool for a Web-Based Audio Sequencer [PDF]

, 2011
Music and sound have a rich semantic structure which is so clear to the composer and the listener, but that remains mostly hidden to computing machinery.
Rizzo, Giuseppe, Morando, Federico, De Martin, Juan Carlos, Servetti, Antonio, Restagno L., Luca Restagno, Vincent Akkermans, Giuseppe Rizzo, Antonio Servetti, Akkermans V., Restagno, L., Akkermans, V.   +11 more
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On gene ontology and function annotation [PDF]

Bioinformation, 2006
The effort of function annotation does not merely involve associating a gene with some structured vocabulary that describes action. Rather the details of the actions, the components of the actions, the larger context of the actions are important issues that are of direct relevance, because they help understand the biological system to which the gene ...
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Non‐homology‐based prediction of gene functions in maize (Zea mays ssp. mays)

The Plant Genome, 2020
Advances in genome sequencing and annotation have eased the difficulty of identifying new gene sequences. Predicting the functions of these newly identified genes remains challenging.
Xiuru Dai, Zheng Xu, Zhikai Liang, Xiaoyu Tu, Silin Zhong, James C. Schnable, Pinghua Li   +6 more
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SFannotation: A Simple and Fast Protein Function Annotation System [PDF]

Genomics & Informatics, 2014
Owing to the generation of vast amounts of sequencing data by using cost-effective, high-throughput sequencing technologies with improved computational approaches, many putative proteins have been discovered after assembly and structural annotation ...
Dong Su Yu, Byung Kwon Kim
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A functional annotation of subproteomes in human plasma [PDF]

PROTEOMICS, 2005
AbstractThe data collected by Human Proteome Organization's Plasma Proteome Pilot project phase was analyzed by members of our working group. Accordingly, a functional annotation of the human plasma proteome was carried out. Here, we report the findings of our analyses.
Ping, P., Vondriska, T. M., Creighton, Chad J., Gandhi, T. K. B., Yang, Ziping, Menon, Rajasree, Kwon, Min-Seok, Drwal, G., Kellman, M., Peri, S., Suresh, S., Gronborg, M., Molina, H., Chaerkady, R., Rekha, B., Muthusamy, B., Shet, A. S., Gerszten, R. E., Wu, Haifeng, Raftery, M., Wasinger, V., Schulze-Knappe, P., Hanash, Samir M., Paik, Young-Ki, Hancock, W. S., States, David J., Omenn, Gilbert S., Pandey, A.   +27 more
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Combining multiple functional annotation tools increases coverage of metabolic annotation

BMC Genomics, 2018
Background Genome-scale metabolic modeling is a cornerstone of systems biology analysis of microbial organisms and communities, yet these genome-scale modeling efforts are invariably based on incomplete functional annotations. Annotated genomes typically
Marc Griesemer, Jeffrey A. Kimbrel, Carol E. Zhou, Ali Navid, Patrik D’haeseleer   +4 more
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AnnotaPipeline: An integrated tool to annotate eukaryotic proteins using multi-omics data

Frontiers in Genetics, 2022
Assignment of gene function has been a crucial, laborious, and time-consuming step in genomics. Due to a variety of sequencing platforms that generates increasing amounts of data, manual annotation is no longer feasible. Thus, the need for an integrated,
Guilherme Augusto Maia, Vilmar Benetti Filho, Eric Kazuo Kawagoe, Tatiany Aparecida Teixeira Soratto, Renato Simões Moreira, Renato Simões Moreira, Edmundo Carlos Grisard, Edmundo Carlos Grisard, Glauber Wagner, Glauber Wagner   +9 more
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