Results 51 to 60 of about 361,695 (297)

The Rice Annotation Project Database (RAP-DB): 2008 update

open access: yes, 2008
The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be ...
Raghuvanshi S   +359 more
core   +1 more source

Assessing the performance of different approaches for functional and taxonomic annotation of metagenomes

open access: yesBMC Genomics, 2019
Background Metagenomes can be analysed using different approaches and tools. One of the most important distinctions is the way to perform taxonomic and functional assignment, choosing between the use of assembly algorithms or the direct analysis of raw ...
Javier Tamames   +2 more
doaj   +1 more source

DFLAT: functional annotation for human development [PDF]

open access: yesBMC Bioinformatics, 2014
Recent increases in genomic studies of the developing human fetus and neonate have led to a need for widespread characterization of the functional roles of genes at different developmental stages. The Gene Ontology (GO), a valuable and widely-used resource for characterizing gene function, offers perhaps the most suitable functional annotation system ...
Heather C. Wick   +8 more
openaire   +3 more sources

The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes

open access: yes, 2005
Overbeek R, Begley T, Butler RM, et al. The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research.
Hanson, Andrew   +50 more
core   +1 more source

High-throughput proteogenomics of Ruegeria pomeroyi: seeding a better genomic annotation for the whole marine Roseobacter clade [PDF]

open access: yes, 2012
Background The structural and functional annotation of genomes is now heavily based on data obtained using automated pipeline systems. The key for an accurate structural annotation consists of blending similarities between closely related genomes with ...
Christie-Oleza Joseph A   +10 more
core   +1 more source

Functional Annotation

open access: yes, 2019
This fileset contains a result of functional annotation. Genbank NR database, UniProt, GO, InterPro, Pfam, CD, TIGRFAM, and EggNOG were used to annotate predicted genes of L. tanake draft genome.
Won Kim (6426446)
core   +3 more sources

Representation of non-coding RNA-mediated regulation of gene expression using the Gene Ontology

open access: yesRNA Biology
Regulatory non-coding RNAs (ncRNAs) are increasingly recognized as integral to the control of biological processes. This is often through the targeted regulation of mRNA expression, but this is by no means the only mechanism through which regulatory ...
Giulia Antonazzo   +3 more
doaj   +1 more source

Assessment of genome annotation using gene function similarity within the gene neighborhood

open access: yesBMC Bioinformatics, 2017
Background Functional annotation of bacterial genomes is an obligatory and crucially important step of information processing from the genome sequences into cellular mechanisms. However, there is a lack of computational methods to evaluate the quality of
Se-Ran Jun   +3 more
doaj   +1 more source

Functional Annotations of Paralogs: A Blessing and a Curse [PDF]

open access: yesLife, 2016
Gene duplication followed by mutation is a classic mechanism of neofunctionalization, producing gene families with functional diversity. In some cases, a single point mutation is sufficient to change the substrate specificity and/or the chemistry performed by an enzyme, making it difficult to accurately separate enzymes with identical functions from ...
Rémi Zallot   +3 more
openaire   +5 more sources

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