Results 21 to 30 of about 3,702,794 (289)
An annotation scheme for citation function [PDF]
Proceedings of the 7th SIGdial Workshop on Discourse and Dialogue - SigDIAL '06, 2006 We study the interplay of the discourse structure of a scientific argument with formal citations. One subproblem of this is to classify academic citations in scientific articles according to their rhetorical function, e.g., as a rival approach, as a part of the solution, or as a flawed approach that justifies the current research.Simone Teufel, Advaith Siddharthan, Dan Tidhar +2 moreopenaire +3 more sourceszhypan/Functional-Annotation-of-Pig: Functional-Annotation-of-Pig
, 2021 Zhangyuan Pan#, Yuelin Yao#, Hongwei Yin, Zexi Cai, Ying Wang, Lijing Bai, Colin Kern, Michelle Halstead, Kelly Chanthavixay, Nares Trakooljul, Klaus Wimmers, Goutam Sahana, Guosheng Su, Mogens Sandø Lund, Merete Fredholm, Peter Karlskov-Mortensen ...pancore +1 more sourceFunctional annotation of regulatory pathways [PDF]
Bioinformatics, 2007 Abstract Motivation: Standardized annotations of biomolecules in interaction networks (e.g. Gene Ontology) provide comprehensive understanding of the function of individual molecules. Extending such annotations to pathways is a critical component of functional characterization of cellular signaling at the systems level ...Jayesh Pandey, Mehmet Koyutürk, Yohan Kim, Wojciech Szpankowski, Shankar Subramaniam, Ananth Grama +5 moreopenaire +3 more sourcesPINOT: an intuitive resource for integrating protein-protein interactions
Cell Communication and Signaling, 2020 Background The past decade has seen the rise of omics data for the understanding of biological systems in health and disease. This wealth of information includes protein-protein interaction (PPI) data derived from both low- and high-throughput assays ...James E. Tomkins, Raffaele Ferrari, Nikoleta Vavouraki, John Hardy, Ruth C. Lovering, Patrick A. Lewis, Liam J. McGuffin, Claudia Manzoni +7 moredoaj +1 more sourceEnhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+ [PDF]
Bioinformatics, 2018 Abstract Summary Second use of clinical data commonly involves annotating biomedical text with terminologies and ontologies. The National Center for Biomedical Ontology Annotator is a frequently used annotation service, originally designed for biomedical data, but not very suitable for clinical text ...Tchechmedjiev, Andon, Abdaoui, Amine, Emonet, Vincent, Melzi, Soumia, Jonnagaddala, Jitendra, Jonquet, Clement +5 moreopenaire +3 more sourcesThe Rice Annotation Project Database (RAP-DB): 2008 update [PDF]
, 2008 The Rice Annotation Project Database (RAP-DB) was created to provide the genome sequence assembly of the International Rice Genome Sequencing Project (IRGSP), manually curated annotation of the sequence, and other genomics information that could be ...Raghuvanshi S, Hosokawa, S., SMITH-WHITE, B, Zhao, Q., An, G., Tateno, Y., Imanishi, T., Nobushima, S., SUZUKI, M, NOBUTA, K, Oota, S., Tatusova T, Nakaoka, H., Lu, C., Shinso Y, Takeda, J.-i., Todokoro F, Yamamoto, N., Khurana, J.P., OOta S, Tanaka, T., Kim, H., Sakai, Y., Piegu B, Ito, Y., Hosokawa S, Bruskiewich, R. M., Kubooka H, Harada, E., Messing, J., Lin, Yao-Cheng, HAN, B, Meyers BC, Wei, F-J, Koyanagi, K. O., Sakai, H., Ikeo K, Ohyanagi, H., IKAWA, H, Meyers, B.C., Barrero, R.A., Aono R, Okido, T., Zuccolo, A., HARADA, E, KOYANAGI, KO, Green PJ, Sasaki T, Sato Y, Bureau TE, Nobuta, K., Barrero, R. A., Yamasaki C, Shibata, M., NUMA, H, Zhao Q, Christie, K.R., Lieberherr, D., Kanno M, Panaud O, Bureau, T.E., Souvorov A, MESSING, J, An, G., Messing J, KIM, H, Hsing, Y-i, PIEGU, B, Lonsdale, D., MEYERS, BC, Bin, H., Ito, Y., HABERER, G, Tanino M, BRUSKIEWICH, RM, Aono, R., Namiki, N., Green, P. J., Sanbonmatsu, R., SAKAI, Y, Fujisawa, M., Zuccolo, A., HABARA, T, Shinso, Y., Fujisawa, M., Ohyanagi, H., Yamasaki, C., HOEN, DR, Christie, K. R., Yamaguchi, K., Kramer, M. R., SHIBATA, M, Kubooka, H., Tada, M., Echeverria M., GREEN, PJ, Yamamoto, N., OOta, S., TANAKA, T, Hoen, D. R., Numa H, LONSDALE, D, An, S., Piegu, B., McCombie RW, Echeverria, M., SAKAI, H, Tateno Y, Habara, T., Ikawa, H., TYAGI, AK, Koyanagi, K.O., Itoh T, Gojobori, T., Harada, E., Raghuvanshi, S., Bureau, T. E., Hosokawa, S., Lin YC, Kramer MR, ANTONIO, BA, Yamamoto, M., Apweiler R, Kubooka, H., TATUSOVA, T, Kawahara Y, Suzuki M, TAKEDA, JI, Lonsdale, D., Antonio BA, Sanbonmatsu, R., Shinso, Y., KHURANA, JP, IMANISHI, T, Kanno, M., Tatusova, T., Hsing YI, FUJISAWA, M, Haberer, G., Numa, H., Yamaguchi, K., Ikeo, K., Todokoro, F., Ikeo, K., Chaparro, C., Singh, N. K., ECHEVERRIA, M, Smith-White, B., Ohyanagi H, Nagamura, Y., Wei, F. J., Wing, R. A., Habara T, NAKAOKA, H, PANAUD, O, WEI, FJ, Fujii, Y., Fuks G, Namiki N, Kikuchi, S., KRAMER, MR, MATSUYA, A, KAWASHIMA, H, Tanino, M., Whitfield, E.J., Christie KR, Harada E, Okido T, Todokoro, F., Saichi N, Singh, N.K., Sasaki, T., Numa, H., Sakata K, NOBUSHIMA, S, MCCOMBIE, RW, Kawashima, H., Kawahara, Y., Zhao, Q., Haberer, G., Bruskiewich, R.M., NAMIKI, N, IKEO, K, Ikawa, H., Nobuta K, Nakaoka H, Piegu, B., Tanino, M., Tateno, Y., KUBOOKA, H, Tanaka, T., HSING, YI, Antonio, B. A., Kim, H-R, SATO, Y, An G, Saichi, N., Suzuki, M., CHRISTIE, KR, Fuks, G., Barrero RA, APWEILER, R, Sato, Y., Tyagi, A. K., ITO, Y, YAMASAKI, C, FUKS, G, AONO, R, YAMAMOTO, M, YAMAMOTO, N, TADA, M, O'Donovan, C. C., TODOKORO, F, Kim H, WU, J, ZUCCOLO, A, OKIDO, T, Shibata M, Matsuya, A., McCombie, R. W., Koyanagi KO, HOSOKAWA, S, Apweiler, R., Chaparro C, BARRERO, RA, Tanaka T, Nobuta, K., Fujii, Y., Tyagi AK, SANBONMATSU, R, SAKATA, K, An S, Echeverria, M., Sakai, H., Tatusova, T., Fujisawa M, Sakata, K., Kawashima H, Lin, Y. C., WING, RA, OOTA, S, Wu, J., Habara, T., Whitfield EJ, LU, C, An, S., Lin, Y-C, Wu, J., Hoen DR, O'DONOVAN, CC, Han B, SHINSO, Y, Smith White B, Whitfield, E. J., Okido, T., Green, P.J., TATENO, Y, KIKUCHI, S, Kawahara, Y., Apweiler, R., Wu J, Kramer, M.R., Kikuchi S, Matsumoto, T., Kawashima, H., Hoen, D.R., Ito Y, Nobushima S, ZHAO, Q, SASAKI, T, Souvorov, A., Tada, M., Sakai, Y., LIEBERHERR, D, Sanbonmatsu R, McCombie, R.W., Fujii Y, Matsuya, A., Fuks, G., Lieberherr, D., Lieberherr D, Antonio, B.A., Ikawa H, Sakata, K., Raghuvanshi, S., MATSUMOTO, T, SAICHI, N, Nobushima, S., Yamamoto N, Gojobori T, Sakai Y, Yamamoto M, Singh NK, Hsing, Y. I., Smith-White, B., Lu C, NAGAMURA, Y, Khurana, J. P., AN, S, Tada M, Souvorov, A., Shibata, M., O'Donovan CC, Sakai H, KANNO, M, Nagamura Y, FUJII, Y, KAWAHARA, Y, Kikuchi, S., AN, G, Sasaki, T., Meyers, B. C., YAMAGUCHI, K, Suzuki, M., Han, B., ZUCCOLO, ANDREA, CHAPARRO, C, Bruskiewich RM, Chaparro, C., Aono, R., SOUVOROV, A, Nakaoka, H., O’Donovan, C.C., OHYANAGI, H, Yamasaki, C., Imanishi T, Lonsdale D, TANINO, M, BUREAU, TE, Lu, C., Panaud, O., Yamaguchi K, Kanno, M., Wing, R.A., Sato, Y., Matsumoto T, ITOH, T, GOJOBORI, T, Panaud, O., Messing, J., Haberer G, Saichi, N., Matsuya A, Wing RA, Khurana JP, Tyagi, A.K., Namiki, N., Itoh, T., Itoh, T., Imanishi, T., SINGH, NK, Matsumoto, T., Nagamura, Y., Yamamoto, M., RAGHUVANSHI, S, Takeda, J. I., Wei FJ, Takeda J, WHITFIELD, EJ, Gojobori, T. +359 morecore +1 more sourceConFunc—functional annotation in the twilight zone [PDF]
Bioinformatics, 2008 Abstract Motivation: The success of genome sequencing has resulted in many protein sequences without functional annotation. We present ConFunc, an automated Gene Ontology (GO)-based protein function prediction approach, which uses conserved residues to generate sequence profiles to infer function.Mark N. Wass, Michael J. E. Sternbergopenaire +4 more sourcesThe subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes [PDF]
, 2005 Overbeek R, Begley T, Butler RM, et al. The subsystems approach to genome annotation and its use in the Project to Annotate 1000 Genomes. Nucleic Acids Research.Hanson, Andrew, Olson, Robert, McHardy, Alice C., Goesmann, Alexander ; https://orcid.org/, Osterman, Andrei, Stevens, Rick, Butler, Ralph M, Ruckert, Christian, Pusch, Gordon D, Butler, Ralph M., Disz, Terry, de Crecy-Lagard, Valerie, Frank, Ed D, Fonstein, Michael, Gerdes, Svetlana, Larsen, Niels, Portnoy, Vasiliy, Frank, Ed D., Goesmann, Alexander, Crécy-Lagard, Valérie de, Choudhuri, Jomuna V., McHardy, Alice C, Thiele, Ines, Olsen, Gary, Overbeek, Ross, Meyer, Folker, Ye, Yuzhen, Begley, Tadhg, Pusch, Gordon D., Choudhuri, Jomuna V, Chuang, Han-Yu, Krause, Lutz, Kubal, Michael, Iwata-Reuyl, Dirk, Rodionov, Dmitry A, Cohoon, Matthew, Edwards, Robert, Diaz, Naryttza N., Rodionov, Dmitry A., Neuweger, Heiko, Linke, Burkhard, Zagnitko, Olga, Vassieva, Olga, Glass, Elizabeth M., Diaz, Naryttza, Rückert, Christian ; https://orcid.org/, Glass, Elizabeth M, Jensen, Roy, Jamshidi, Neema, Steiner, Jason, Vonstein, Veronika +50 morecore +1 more source
