Results 21 to 30 of about 339,629 (251)

An annotation scheme for citation function [PDF]

Proceedings of the 7th SIGdial Workshop on Discourse and Dialogue - SigDIAL '06, 2006
We study the interplay of the discourse structure of a scientific argument with formal citations. One subproblem of this is to classify academic citations in scientific articles according to their rhetorical function, e.g., as a rival approach, as a part of the solution, or as a flawed approach that justifies the current research.
Simone Teufel, Advaith Siddharthan, Dan Tidhar   +2 more
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Review on the Computational Genome Annotation of Sequences Obtained by Next-Generation Sequencing

Biology, 2020
Next-Generation Sequencing (NGS) has made it easier to obtain genome-wide sequence data and it has shifted the research focus into genome annotation. The challenging tasks involved in annotation rely on the currently available tools and techniques to ...
Girum Fitihamlak Ejigu, Jaehee Jung
doaj   +1 more source

PINOT: an intuitive resource for integrating protein-protein interactions

Cell Communication and Signaling, 2020
Background The past decade has seen the rise of omics data for the understanding of biological systems in health and disease. This wealth of information includes protein-protein interaction (PPI) data derived from both low- and high-throughput assays ...
James E. Tomkins, Raffaele Ferrari, Nikoleta Vavouraki, John Hardy, Ruth C. Lovering, Patrick A. Lewis, Liam J. McGuffin, Claudia Manzoni   +7 more
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Enhanced functionalities for annotating and indexing clinical text with the NCBO Annotator+ [PDF]

Bioinformatics, 2018
Abstract Summary Second use of clinical data commonly involves annotating biomedical text with terminologies and ontologies. The National Center for Biomedical Ontology Annotator is a frequently used annotation service, originally designed for biomedical data, but not very suitable for clinical text ...
Tchechmedjiev, Andon, Abdaoui, Amine, Emonet, Vincent, Melzi, Soumia, Jonnagaddala, Jitendra, Jonquet, Clement   +5 more
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ConFunc—functional annotation in the twilight zone [PDF]

Bioinformatics, 2008
Abstract Motivation: The success of genome sequencing has resulted in many protein sequences without functional annotation. We present ConFunc, an automated Gene Ontology (GO)-based protein function prediction approach, which uses conserved residues to generate sequence profiles to infer function.
Mark N. Wass, Michael J. E. Sternberg
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Protein Function Prediction with Incomplete Annotations [PDF]

IEEE/ACM Transactions on Computational Biology and Bioinformatics, 2014
Automated protein function prediction is one of the grand challenges in computational biology. Multi-label learning is widely used to predict functions of proteins. Most of multi-label learning methods make prediction for unlabeled proteins under the assumption that the labeled proteins are completely annotated, i.e., without any missing functions ...
Guo-Xian Yu, Huzefa Rangwala, Carlotta Domeniconi, Guoji Zhang, Zhiwen Yu 0002   +4 more
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On gene ontology and function annotation [PDF]

Bioinformation, 2006
The effort of function annotation does not merely involve associating a gene with some structured vocabulary that describes action. Rather the details of the actions, the components of the actions, the larger context of the actions are important issues that are of direct relevance, because they help understand the biological system to which the gene ...
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Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs. [PDF]

PLoS Genetics, 2006
The international FANTOM consortium aims to produce a comprehensive picture of the mammalian transcriptome, based upon an extensive cDNA collection and functional annotation of full-length enriched cDNAs.
Norihiro Maeda, Takeya Kasukawa, Rieko Oyama, Julian Gough, Martin Frith, Pär G Engström, Boris Lenhard, Rajith N Aturaliya, Serge Batalov, Kirk W Beisel, Carol J Bult, Colin F Fletcher, Alistair R R Forrest, Masaaki Furuno, David Hill, Masayoshi Itoh, Mutsumi Kanamori-Katayama, Shintaro Katayama, Masaru Katoh, Tsugumi Kawashima, John Quackenbush, Timothy Ravasi, Brian Z Ring, Kazuhiro Shibata, Koji Sugiura, Yoichi Takenaka, Rohan D Teasdale, Christine A Wells, Yunxia Zhu, Chikatoshi Kai, Jun Kawai, David A Hume, Piero Carninci, Yoshihide Hayashizaki   +33 more
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Re‐annotation of the sequence > annotation: opportunities for the functional microbiologist [PDF]

Microbial Biotechnology, 2015
Functional annotation of proteins has been central to the development of biology in the post-genomic era. In such a way, the wealth of information encoded by genome sequences has become accessible to the broader biological community. One may even argue that this has served the purpose of democratization of science, as almost every scientist in the ...
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The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines

Frontiers in Genetics, 2014
With the advancement of new high throughput sequencing technologies, there has been an increase in the number of genome sequencing projects worldwide, which has yielded complete genome sequences of human, animals and plants.
Gaston K Mazandu, Nicola eMulder
doaj   +1 more source