Results 21 to 30 of about 37,620 (216)

Comparison of three microarray probe annotation pipelines: differences in strategies and their effect on downstream analysis [PDF]

, 2009
BACKGROUND: Reliable annotation linking oligonucleotide probes to target genes is essential for functional biological analysis of microarray experiments.
Groenen, M.A., Leunissen, J.A., Neerincx, P.B.T., Groenen, M.A.M., Pierrot Casel, Casel, P., Michael Watson, Neerincx, P.B., Christophe Klopp, Klopp, C., Pieter Neerincx, Dennis Prickett, Martien Groenen, Nie, H., Jack Leunissen, Haisheng Nie, Watson, M., Leunissen, J.A.M., Prickett, D.   +18 more
core   +1 more source

Improved annotation of 3' untranslated regions and complex loci by combination of strand-specific direct RNA sequencing, RNA-seq and ESTs [PDF]

, 2014
The reference annotations made for a genome sequence provide the framework for all subsequent analyses of the genome. Correct and complete annotation in addition to the underlying genomic sequence is particularly important when interpreting the results ...
Junfang Song, Geoffrey J Barton, Schurch Nicholas J., Brown, Sara J., Gordon G Simpson, Nicholas J Schurch, McLean, W. H. Irwin, Song Junfang, Simpson Gordon G., Sherstnev, Alexander, Brown Sara J., Alexander Sherstnev, Song, Junfang, McLean W. H. Irwin, Duc, Celine, Kate G Storey, Storey, Kate G., Schurch, Nicholas J., Cole Christian, Sherstnev Alexander, Simpson, Gordon G., Céline Duc, W H Irwin McLean, Cole, Christian; id_orcid, Christian Cole, Barton Geoffrey J., Sara J Brown, Duc Céline, Barton, Geoffrey J.; id_orcid, Storey Kate G.   +29 more
core   +1 more source

Facilitating functional annotation of chicken microarray data [PDF]

, 2009
Background Modeling results from chicken microarray studies is challenging for researchers due to little functional annotation associated with these arrays.
Burgess Shane C, Gresham, Cathy R, Gresham Cathy R, Kumar Ranjit, Burgess, Shane C, Shane C Burgess, Kumar, Ranjit, Buza Teresia J, Cathy R Gresham, McCarthy, Fiona M, Teresia J Buza, Fiona M McCarthy, Ranjit Kumar, McCarthy Fiona M, Buza, Teresia J   +14 more
core   +1 more source

Functional genome Annotation in Bacterial infections: A Review [PDF]

Al Ameen Journal of Medical Sciences, 2021
Functional annotation provides the information of gene about its biological identity and various types of molecular function and biological role like sub-cellular location and its expression.
Sharique Ahmad, Shivani Singh, Shriya Arora, Saurabh Srivastava   +3 more
doaj  

A curated catalog of canine and equine keratin genes. [PDF]

PLoS ONE, 2017
Keratins represent a large protein family with essential structural and functional roles in epithelial cells of skin, hair follicles, and other organs. During evolution the genes encoding keratins have undergone multiple rounds of duplication and humans ...
Pierre Balmer, Anina Bauer, Shashikant Pujar, Kelly M McGarvey, Monika Welle, Arnaud Galichet, Eliane J Müller, Kim D Pruitt, Tosso Leeb, Vidhya Jagannathan   +9 more
doaj   +1 more source

Human gene correlation analysis (HGCA): A tool for the identification of transcriptionally co-expressed genes

BMC Research Notes, 2012
Background Bioinformatics and high-throughput technologies such as microarray studies allow the measure of the expression levels of large numbers of genes simultaneously, thus helping us to understand the molecular mechanisms of various biological ...
Michalopoulos Ioannis, Pavlopoulos Georgios A, Malatras Apostolos, Karelas Alexandros, Kostadima Myrto-Areti, Schneider Reinhard, Kossida Sophia   +6 more
doaj   +1 more source

Impact of gene annotation choice on the quantification of RNA-seq data

BMC Bioinformatics, 2022
Background RNA sequencing is currently the method of choice for genome-wide profiling of gene expression. A popular approach to quantify expression levels of genes from RNA-seq data is to map reads to a reference genome and then count mapped reads to ...
David Chisanga, Yang Liao, Wei Shi
doaj   +1 more source

Gene coexpression network analysis as a source of functional annotation for rice genes. [PDF]

PLoS ONE, 2011
With the existence of large publicly available plant gene expression data sets, many groups have undertaken data analyses to construct gene coexpression networks and functionally annotate genes.
Kevin L Childs, Rebecca M Davidson, C Robin Buell   +2 more
doaj   +1 more source

The use of semantic similarity measures for optimally integrating heterogeneous Gene Ontology data from large scale annotation pipelines

Frontiers in Genetics, 2014
With the advancement of new high throughput sequencing technologies, there has been an increase in the number of genome sequencing projects worldwide, which has yielded complete genome sequences of human, animals and plants.
Gaston K Mazandu, Nicola eMulder
doaj   +1 more source

Repertoire-wide gene structure analyses: a case study comparing automatically predicted and manually annotated gene models

BMC Genomics, 2019
Background The location and modular structure of eukaryotic protein-coding genes in genomic sequences can be automatically predicted by gene annotation algorithms.
Jeanne Wilbrandt, Bernhard Misof, Kristen A. Panfilio, Oliver Niehuis   +3 more
doaj   +1 more source