Results 51 to 60 of about 58,106,402 (334)

New insights into adaptation and population structure of cork oak using genotyping by sequencing

Global Change Biology, 2018
Species respond to global climatic changes in a local context. Understanding this process, including its speed and intensity, is paramount due to the pace at which such changes are currently occurring.
F. Pina-Martins, J. Baptista, G. Pappas, O. Paulo   +3 more
semanticscholar   +1 more source

Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis [PDF]

G3 Genes|Genomes|Genetics, 2015
Abstract Genotyping-by-sequencing (GBS), and related methods, are based on high-throughput short-read sequencing of genomic complexity reductions followed by discovery of single nucleotide polymorphisms (SNPs) within sequence tags. This provides a powerful and economical approach to whole-genome genotyping, facilitating applications ...
Tinker, Nicholas A, Bekele, Wubishet A, Hattori, Jiro   +2 more
openaire   +3 more sources

Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data

BMC Bioinformatics, 2017
Next-generation sequencing (NGS) technologies have accelerated considerably the investigation into the composition of genomes and their functions. Genotyping-by-sequencing (GBS) is a genotyping approach that makes use of NGS to rapidly and economically ...
D. Torkamaneh, J. Laroche, Maxime Bastien, Amina Abed, F. Belzile   +4 more
semanticscholar   +1 more source

The development of a porcine 50K SNP panel using genotyping by target sequencing and its application

Journal of Integrative Agriculture
Genotyping by target sequencing (GBTS) integrates the advantages of silicon-based technology (high stability and reliability) and genotyping by sequencing (high flexibility and cost-effectiveness). However, GBTS panels are not currently available in pigs.
Zipeng Zhang, Siyuan Xing, Ao Qiu, Ning Zhang, Wenwen Wang, Changsong Qian, Jia’nan Zhang, Chuduan Wang, Qin Zhang, Xiangdong Ding   +9 more
doaj   +1 more source

tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci

Nucleic Acids Research, 2017
Conventional genotyping-by-sequencing (cGBS) strategies suffer from high rates of missing data and genotyping errors, particularly at heterozygous sites.
Alina Ott, Sanzhen Liu, J. Schnable, C. Yeh, Kai-Sin Wang, P. Schnable   +5 more
semanticscholar   +1 more source

Analysis of Genotyping-by-Sequencing (GBS) Data

, 2016
The development of genotyping-by-sequencing (GBS) to rapidly detect nucleotide variation at the whole genome level, in many individuals simultaneously, has provided a transformative genetic profiling technique. GBS can be carried out in species with or without reference genome sequences yields huge amounts of potentially informative data.
Kagale, Sateesh, Koh, Chushin, Clarke, Wayne E., Bollina, Venkatesh, Parkin, Isobel A. P., Sharpe, Andrew G.   +5 more
openaire   +4 more sources

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod

Ecology and Evolution, 2020
Population genetic structure in the marine environment can be influenced by life‐history traits such as developmental mode (biphasic, with distinct adult and larval morphology, and direct development, in which larvae resemble adults) or habitat ...
William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale   +4 more
doaj   +1 more source

Protocol: a versatile, inexpensive, high-throughput plant genomic DNA extraction method suitable for genotyping-by-sequencing

Plant Methods, 2018
The recent development of next-generation sequencing DNA marker technologies, such as genotyping-by-sequencing (GBS), generates thousands of informative single nucleotide polymorphism markers in almost any species, regardless of genomic resources.
C. Anderson, Benjamin K. Franzmayr, Soon Won Hong, A. Larking, T. V. van Stijn, Rachel Tan, Roger A. Moraga, M. Faville, A. Griffiths   +8 more
semanticscholar   +1 more source

Comparative Evaluation of Variant Calling Strategies for High-Density SNP Discovery in Polyploid Kiwifruit (Actinidia spp.)

Horticulturae
Single nucleotide polymorphisms (SNPs) are widely used for genetic diversity analysis, linkage mapping, genome-wide association studies (GWAS), and molecular marker development in crop plants.
Yumi Kim, Mockhee Lee, Daeil Kim
doaj   +1 more source

Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing

Theoretical and Applied Genetics, 2017
Genomic prediction models for starch content and chipping quality show promising results, suggesting that genomic selection is a feasible breeding strategy in tetraploid potato.
E. Sverrisdóttir, S. Byrne, Ea Høegh Riis Sundmark, H. Johnsen, H. Kirk, T. Asp, L. Janss, K. Nielsen   +7 more
semanticscholar   +1 more source