Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden
Agronomy, 2019 Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling.
Natalia Cristina Aguirre +14 more
doaj +1 more source
Selection Mapping Identifies Loci Underpinning Autumn Dormancy in Alfalfa (Medicago sativa). [PDF]
, 2018 Autumn dormancy in alfalfa (Medicago sativa) is associated with agronomically important traits including regrowth rate, maturity, and winter survival. Historical recurrent selection experiments have been able to manipulate the dormancy response.
Brummer, E Charles +3 more
core +3 more sources
A single polyploidization event at the origin of the tetraploid genome of Coffea arabica is responsible for the extremely low genetic variation in wild and cultivated germplasm [PDF]
, 2020 The genome of the allotetraploid species Coffea arabica L. was sequenced to assemble independently the two component subgenomes (putatively deriving from C. canephora and C.
Al Hakimi, Amin +28 more
core +3 more sources
Genomic Prediction in Tetraploid Ryegrass Using Allele Frequencies Based on Genotyping by Sequencing
Frontiers in Plant Science, 2018 Perennial ryegrass is an outbreeding forage species and is one of the most widely used forage grasses in temperate regions. The aim of this study was to investigate the possibility of implementing genomic prediction in tetraploid perennial ryegrass, to ...
Xiangyu Guo +7 more
doaj +1 more source
Genotyping-by-sequencing and genomic selection applications in hexaploid triticale [PDF]
G3 Genes|Genomes|Genetics, 2021 Abstract Triticale, a hybrid species between wheat and rye, is one of the newest additions to the plant kingdom with a very short history of improvement. It has very limited genomic resources because of its large and complex genome. Objectives of this study were to generate dense marker data, understand genetic diversity, population ...
Habtamu Ayalew +7 more
openaire +2 more sources
An Ultra-High-Density, Transcript-Based, Genetic Map of Lettuce. [PDF]
, 2013 We have generated an ultra-high-density genetic map for lettuce, an economically important member of the Compositae, consisting of 12,842 unigenes (13,943 markers) mapped in 3696 genetic bins distributed over nine chromosomal linkage groups.
Ashrafi, Hamid +10 more
core +1 more source
Construction of relatedness matrices using genotyping-by-sequencing data [PDF]
BMC Genomics, 2015 AbstractBackgroundGenotyping-by-sequencing (GBS) is becoming an attractive alternative to array-based methods for genotyping individuals for a large number of single nucleotide polymorphisms (SNPs). Costs can be lowered by reducing the mean sequencing depth, but this results in genotype calls of lower quality.
Dodds, Ken G +6 more
openaire +2 more sources
Genomic selection in rubber tree breeding: A comparison of models and methods for managing G×E interactions [PDF]
, 2019 Several genomic prediction models combining genotype × environment (G×E) interactions have recently been developed and used for genomic selection (GS) in plant breeding programs. G×E interactions reduce selection accuracy and limit genetic gains in plant
Francisco, Felipe O. +6 more
core +2 more sources
Identification of quantitative trait loci controlling root and shoot traits associated with drought tolerance in a lentil (Lens culinaris Medik.) recombinant inbred line population [PDF]
, 2016 Drought is one of the major abiotic stresses limiting lentil productivity in rainfed production systems. Specific rooting patterns can be associated with drought avoidance mechanisms that can be used in lentil breeding programs.
Coyne, Clarice J +8 more
core +5 more sources
Animals, 2022 The domestic rabbit (Oryctolagus cuniculus f. domesticus) is a very important variety in biomedical research and agricultural animal breeding.
Congyan Li +15 more
doaj +1 more source