Results 41 to 50 of about 55,908,906 (258)

The development of a porcine 50K SNP panel using genotyping by target sequencing and its application

Journal of Integrative Agriculture
Genotyping by target sequencing (GBTS) integrates the advantages of silicon-based technology (high stability and reliability) and genotyping by sequencing (high flexibility and cost-effectiveness). However, GBTS panels are not currently available in pigs.
Zipeng Zhang, Siyuan Xing, Ao Qiu, Ning Zhang, Wenwen Wang, Changsong Qian, Jia’nan Zhang, Chuduan Wang, Qin Zhang, Xiangdong Ding   +9 more
doaj   +1 more source

Concordant geographic and genetic structure revealed by genotyping‐by‐sequencing in a New Zealand marine isopod

Ecology and Evolution, 2020
Population genetic structure in the marine environment can be influenced by life‐history traits such as developmental mode (biphasic, with distinct adult and larval morphology, and direct development, in which larvae resemble adults) or habitat ...
William S. Pearman, Sarah J. Wells, Olin K. Silander, Nikki E. Freed, James Dale   +4 more
doaj   +1 more source

Analysis of Genotyping-by-Sequencing (GBS) Data

, 2016
The development of genotyping-by-sequencing (GBS) to rapidly detect nucleotide variation at the whole genome level, in many individuals simultaneously, has provided a transformative genetic profiling technique. GBS can be carried out in species with or without reference genome sequences yields huge amounts of potentially informative data.
Kagale, Sateesh, Koh, Chushin, Clarke, Wayne E., Bollina, Venkatesh, Parkin, Isobel A. P., Sharpe, Andrew G.   +5 more
openaire   +4 more sources

Comparative Evaluation of Variant Calling Strategies for High-Density SNP Discovery in Polyploid Kiwifruit (Actinidia spp.)

Horticulturae
Single nucleotide polymorphisms (SNPs) are widely used for genetic diversity analysis, linkage mapping, genome-wide association studies (GWAS), and molecular marker development in crop plants.
Yumi Kim, Mockhee Lee, Daeil Kim
doaj   +1 more source

PIMS sequencing extension:a laboratory information management system for DNA sequencing facilities [PDF]

, 2011
Background: Facilities that provide a service for DNA sequencing typically support large numbers of users and experiment types. The cost of services is often reduced by the use of liquid handling robots but the efficiency of such facilities is hampered ...
McPherson, MJ, Troshin, Peter V., Denise Ashworth, Michael J McPherson, Geoffrey J Barton, Ashworth, Denise, Troshin, PV, McPherson, Michael J., Ashworth, D, Postis, VLG, Baldwin, SA, Postis, Vincent L. G., Barton, GJ, Baldwin, Stephen A., Barton, Geoffrey J.; id_orcid, Peter V Troshin, Vincent LG Postis, Postis, VL, Stephen A Baldwin   +18 more
core   +1 more source

From mice to humans—divergent strategies for intestinal homeostasis and regeneration

FEBS Letters, EarlyView.
Recent advances such as organoid genome editing, xenotransplantation, imaging, and whole‐genome sequencing have enabled direct studies of human intestinal stem cells (ISCs). These studies reveal species‐specific features, including slower ISC proliferation, distinct injury responses, slower somatic mutation accumulation in humans, and an inverse ...
Keiko Ishikawa, Shinya Sugimoto, Toshiro Sato   +2 more
wiley   +1 more source

Use of biostimulants for water stress mitigation in two durum wheat (Triticum durum Desf.) genotypes with different drought tolerance

Plant Stress
Agriculture is facing complex and unprecedented challenges, such as climate change and global population growth, associated with the increase of food demand. Durum wheat (DW) is a strategic crop for food security in the Mediterranean region. In this work,
Matteo Spada, Miriam Marín-Sanz, Valentina Bigini, Giulia Quagliata, Eleonora Coppa, Francisco Barro, Daniel Savatin, Roberto Ruggeri, Francesco Sestili, Francesco Rossini, Stefania Astolfi   +10 more
doaj   +1 more source

Genotyping 1000 yeast strains by next-generation sequencing

BMC Genomics, 2013
Background The throughput of next-generation sequencing machines has increased dramatically over the last few years; yet the cost and time for library preparation have not changed proportionally, thus representing the main bottleneck for sequencing large
Wilkening Stefan, Tekkedil Manu M, Lin Gen, Fritsch Emilie S, Wei Wu, Gagneur Julien, Lazinski David W, Camilli Andrew, Steinmetz Lars M   +8 more
doaj   +1 more source

Strong isolation by distance among local populations of an endangered butterfly species (Euphydryas aurinia)

Ecology and Evolution, 2021
The marsh fritillary (Euphydryas aurinia) is a critically endangered butterfly species in Denmark known to be particularly vulnerable to habitat fragmentation due to its poor dispersal capacity.
Cino Pertoldi, Aritz Ruiz‐Gonzalez, Simon Bahrndorff, Nanna Renee Lauridsen, Thøger Nisbeth Henriksen, Anne Eskildsen, Toke Thomas Høye   +6 more
doaj   +1 more source

Analysis of Genetic Diversity and Development of A Core Collection in Walnut (Juglans regia L.) Germplasm Native to China via Genotyping-by-Sequencing

Agronomy, 2023
Popular knowledge of the population structure and genetic diversity of a plant species is essential for designing improvement strategies. The genotyping-by-sequencing (GBS) approach has been used to simplify complex genomes and has become a popular high ...
Jing Ren, Yu-An Wang, Xiao-Kang Zhou, Kai-Wen Xie, Fu-Jun Han, Hai Peng, Xiao-Yong Liu   +6 more
doaj   +1 more source