Results 41 to 50 of about 58,106,402 (334)

A single-nucleotide-polymorphism real-time PCR assay for genotyping of mycobacterium tuberculosis complex in peri-urban Kampala [PDF]

, 2015
Accurate and high-throughput genotyping of Mycobacterium tuberculosis complex (MTBC) may be important for understanding the epidemiology and pathogenesis of tuberculosis (TB).
Eddie M. Wampande, Kathleen Eisenach, Mary Nsereko, Stavroula K. Hatzios, Wampande, Eddie M., Hatzios, Stavroula K., Mayanja, Harriet K., Mupere, Ezekiel, Gagneux, Sebastien, Eisenach, Kathleen, Joloba, Moses L., Moses L. Joloba, Achan, Beatrice, Ezekiel Mupere, Nsereko, Mary, Sebastien Gagneux, Harriet K. Mayanja, null null, Boom, W Henry, Boom, W. Henry, W Henry Boom, Tuberculosis Research Unit,, Beatrice Achan, Mupere E, Nsereko M, Eisenach K, Gagneux S, Boom WH, Wampande EM, Achan B, Mayanja HK, Hatzios SK, Joloba ML   +32 more
core   +2 more sources

Genomic Prediction in Tetraploid Ryegrass Using Allele Frequencies Based on Genotyping by Sequencing

Frontiers in Plant Science, 2018
Perennial ryegrass is an outbreeding forage species and is one of the most widely used forage grasses in temperate regions. The aim of this study was to investigate the possibility of implementing genomic prediction in tetraploid perennial ryegrass, to ...
Xiangyu Guo, Fabio Cericola, Dario Fè, Morten G. Pedersen, Ingo Lenk, Christian S. Jensen, Just Jensen, Lucas L. Janss   +7 more
doaj   +1 more source

An Integrated Genotyping‐by‐Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes

The Plant Genome, 2019
A reference single nucleotide polymorphism dataset covering over 10,000 sorghum genotypes was developed for the crop research community. The dataset was validated through gene‐resolution mapping of known genes for pigmentation, plant height, and ...
Zhen-Bin Hu, Marcus O. Olatoye, S. Marla, Geoffrey P. Morris   +3 more
semanticscholar   +1 more source

Using genotyping‐by‐sequencing to predict gender in animals [PDF]

Animal Genetics, 2019
SummaryGender assignment errors are common in some animal species and lead to inaccuracies in downstream analyses. Procedures for detecting gender misassignment are available for array‐based SNP data but are still being developed for genotyping‐by‐sequencing (GBS) data.
T. P. Bilton, A. J. Chappell, S. M. Clarke, R. Brauning, K. G. Dodds, J. C. McEwan, S. J. Rowe   +6 more
openaire   +2 more sources

Optimization of Genotype by Sequencing data for phylogenetic purposes

MethodsX, 2020
• Herein we propose a framework for assembling and analyzing Genotype by Sequencing (GBS) data to better understand evolutionary relationships within a group of closely related species using the mastiff bats (Molossus) as our model system. Many species within this genus have low-levels of genetic variation within and between morphologically distinct ...
L.O. Loureiro, M.D. Engstrom, B.K. Lim
openaire   +3 more sources

Genotyping-by-Sequencing (GBS) Revealed Molecular Genetic Diversity of Iranian Wheat Landraces and Cultivars

Frontiers in Plant Science, 2017
Background: Genetic diversity is an essential resource for breeders to improve new cultivars with desirable characteristics. Recently, genotyping-by-sequencing (GBS), a next-generation sequencing (NGS) technology that can simplify complex genomes, has ...
H. Alipour, M. Bihamta, V. Mohammadi, S. Peyghambari, G. Bai, Guo-Rong Zhang   +5 more
semanticscholar   +1 more source

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data. [PDF]

, 2014
Targeted resequencing technologies have allowed for efficient and cost-effective detection of genomic variants in specific regions of interest. Although capture sequencing has been primarily used for investigating single nucleotide variants and indels ...
Bellos, Evangelos; https://orcid.org/, Bellos, Evangelos, Kumar, Vikrant, Cheng, C-Y, Cheng, CY, Wong, TYI, Davila, S, Bellos, E, Phua, ZYA, Maggi, Jordi; https://orcid.org/, Lin, C, Phua, Zai Yang, Coin, Lachlan J M, Coin, LJM, Hibberd, ML, Hibberd, Martin L., Wong, TY, Cheng, Ching-Yu, Gemmy Cheung, CM, Cheung, CMIG, Coin, Lachlan JM, Yang Phua, Z, Lin, Clarabelle, Maggi, Jordi, Kumar, V, Cheng, Ching Yu, Maggi, J, Hibberd, Martin L, Coin, Lachlan J.M., Cheung, Chui Ming Gemmy, Davila, Sonia, Wong, Tien Yin, Cheung CM, Kumar V, Davila S, Maggi J, Coin LJ, Cheng CY, Wong TY, Lin C, Hibberd ML, Bellos E, Phua ZY   +42 more
core   +1 more source

Trait Analysis in Domestic Rabbits (Oryctolagus cuniculus f. domesticus) Using SNP Markers from Genotyping-by-Sequencing Data

Animals, 2022
The domestic rabbit (Oryctolagus cuniculus f. domesticus) is a very important variety in biomedical research and agricultural animal breeding.
Congyan Li, Yuying Li, Jie Zheng, Zhiqiang Guo, Xiuli Mei, Min Lei, Yongjun Ren, Xiangyu Zhang, Cuixia Zhang, Chao Yang, Li Tang, Yang Ji, Rui Yang, Jifeng Yu, Xiaohong Xie, Liangde Kuang   +15 more
doaj   +1 more source

Genotyping‐by‐sequencing resolves relationships in Polygonaceae tribe Eriogoneae [PDF]

TAXON, 2021
AbstractThe resolution of cryptic diversity is essential for understanding the evolutionary diversification of lineages and establishing conservation priorities. We examine relationships in Eriogoneae (Polygonaceae), a diverse lineage in western North America.
Peter B. Pearman, Tyler S. Alioto, Jean‐Remi P. Trotta, J. Travis Columbus   +3 more
openaire   +3 more sources

Detection of Hub QTLs Underlying the Genetic Basis of Three Modules Covering Nine Agronomic Traits in an F₂ Soybean Population

Agronomy, 2022
Deciphering the genetic basis underlying agronomic traits is of importance for soybean improvement. However, covariation, modulated by genetic correlations between complicated traits via hub QTLs, commonly affects the efficiency and accuracy of soybean ...
Mengmeng Fu, Bo Qi, Shuguang Li, Haifeng Xu, Yaqi Wang, Zhixin Zhao, Xiwen Yu, Liyuan Pan, Jiayin Yang   +8 more
doaj   +1 more source