Results 31 to 40 of about 241,454 (288)
Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden
Agronomy, 2019 Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling.
Natalia Cristina Aguirre +14 more
doaj +1 more source
Optimization of Genotype by Sequencing data for phylogenetic purposes
MethodsX, 2020 • Herein we propose a framework for assembling and analyzing Genotype by Sequencing (GBS) data to better understand evolutionary relationships within a group of closely related species using the mastiff bats (Molossus) as our model system. Many species within this genus have low-levels of genetic variation within and between morphologically distinct ...
L.O. Loureiro, M.D. Engstrom, B.K. Lim
openaire +3 more sources
Genomic Prediction in Tetraploid Ryegrass Using Allele Frequencies Based on Genotyping by Sequencing
Frontiers in Plant Science, 2018 Perennial ryegrass is an outbreeding forage species and is one of the most widely used forage grasses in temperate regions. The aim of this study was to investigate the possibility of implementing genomic prediction in tetraploid perennial ryegrass, to ...
Xiangyu Guo +7 more
doaj +1 more source
Using genotyping‐by‐sequencing to predict gender in animals [PDF]
Animal Genetics, 2019 SummaryGender assignment errors are common in some animal species and lead to inaccuracies in downstream analyses. Procedures for detecting gender misassignment are available for array‐based SNP data but are still being developed for genotyping‐by‐sequencing (GBS) data.
T. P. Bilton +6 more
openaire +2 more sources
Genotyping‐by‐sequencing resolves relationships in Polygonaceae tribe Eriogoneae [PDF]
TAXON, 2021 AbstractThe resolution of cryptic diversity is essential for understanding the evolutionary diversification of lineages and establishing conservation priorities. We examine relationships in Eriogoneae (Polygonaceae), a diverse lineage in western North America.
Peter B. Pearman +3 more
openaire +3 more sources
An Integrated Genotyping‐by‐Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes
The Plant Genome, 2019 A reference single nucleotide polymorphism dataset covering over 10,000 sorghum genotypes was developed for the crop research community. The dataset was validated through gene‐resolution mapping of known genes for pigmentation, plant height, and ...
Zhenbin Hu +3 more
semanticscholar +1 more source
Animals, 2022 The domestic rabbit (Oryctolagus cuniculus f. domesticus) is a very important variety in biomedical research and agricultural animal breeding.
Congyan Li +15 more
doaj +1 more source
Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis [PDF]
G3 Genes|Genomes|Genetics, 2015 Abstract Genotyping-by-sequencing (GBS), and related methods, are based on high-throughput short-read sequencing of genomic complexity reductions followed by discovery of single nucleotide polymorphisms (SNPs) within sequence tags. This provides a powerful and economical approach to whole-genome genotyping, facilitating applications ...
Tinker, Nicholas A +2 more
openaire +3 more sources
Genotyping-by-sequencing and genomic selection applications in hexaploid triticale [PDF]
G3 Genes|Genomes|Genetics, 2021 Abstract Triticale, a hybrid species between wheat and rye, is one of the newest additions to the plant kingdom with a very short history of improvement. It has very limited genomic resources because of its large and complex genome. Objectives of this study were to generate dense marker data, understand genetic diversity, population ...
Habtamu Ayalew +7 more
openaire +2 more sources
Agronomy, 2022 Deciphering the genetic basis underlying agronomic traits is of importance for soybean improvement. However, covariation, modulated by genetic correlations between complicated traits via hub QTLs, commonly affects the efficiency and accuracy of soybean ...
Mengmeng Fu +8 more
doaj +1 more source