Results 31 to 40 of about 55,908,906 (258)

Applications of genotyping by sequencing in aquaculture breeding and genetics [PDF]

Reviews in Aquaculture, 2017
AbstractSelective breeding is increasingly recognized as a key component of sustainable production of aquaculture species. The uptake of genomic technology in aquaculture breeding has traditionally lagged behind terrestrial farmed animals. However, the rapid development and application of sequencing technologies has allowed aquaculture to narrow the ...
Diego Robledo, Christos Palaiokostas, Luca Bargelloni, Paulino Martínez, Ross Houston   +4 more
openaire   +5 more sources

A single-nucleotide-polymorphism real-time PCR assay for genotyping of mycobacterium tuberculosis complex in peri-urban Kampala [PDF]

, 2015
Accurate and high-throughput genotyping of Mycobacterium tuberculosis complex (MTBC) may be important for understanding the epidemiology and pathogenesis of tuberculosis (TB).
Eddie M. Wampande, Kathleen Eisenach, Mary Nsereko, Stavroula K. Hatzios, Wampande, Eddie M., Hatzios, Stavroula K., Mayanja, Harriet K., Mupere, Ezekiel, Gagneux, Sebastien, Eisenach, Kathleen, Joloba, Moses L., Moses L. Joloba, Achan, Beatrice, Ezekiel Mupere, Nsereko, Mary, Sebastien Gagneux, Harriet K. Mayanja, null null, Boom, W Henry, Boom, W. Henry, W Henry Boom, Tuberculosis Research Unit,, Beatrice Achan   +22 more
core   +2 more sources

Genotyping-by-sequencing performance in selected livestock species [PDF]

Genomics, 2019
Application of next generation sequencing for large scale genotyping in livestock is limited by high costs and challenging data analysis process. However, available restriction enzyme-based enrichment techniques like e.g. genotyping-by-sequencing (GBS) are promising tools allowing reduction of financial outlies by a high sample multiplexing and ...
Artur Gurgul, Anna Miksza-Cybulska, Tomasz Szmatoła, Igor Jasielczuk, Agata Piestrzynska-Kajtoch, Agnieszka Fornal, Ewelina Semik-Gurgul, Monika Bugno-Poniewierska   +7 more
openaire   +2 more sources

Genotyping‐by‐sequencing resolves relationships in Polygonaceae tribe Eriogoneae [PDF]

TAXON, 2021
AbstractThe resolution of cryptic diversity is essential for understanding the evolutionary diversification of lineages and establishing conservation priorities. We examine relationships in Eriogoneae (Polygonaceae), a diverse lineage in western North America.
Peter B. Pearman, Tyler S. Alioto, Jean‐Remi P. Trotta, J. Travis Columbus   +3 more
openaire   +3 more sources

Optimization of Genotype by Sequencing data for phylogenetic purposes

MethodsX, 2020
• Herein we propose a framework for assembling and analyzing Genotype by Sequencing (GBS) data to better understand evolutionary relationships within a group of closely related species using the mastiff bats (Molossus) as our model system. Many species within this genus have low-levels of genetic variation within and between morphologically distinct ...
L.O. Loureiro, M.D. Engstrom, B.K. Lim
openaire   +3 more sources

Using genotyping‐by‐sequencing to predict gender in animals [PDF]

Animal Genetics, 2019
SummaryGender assignment errors are common in some animal species and lead to inaccuracies in downstream analyses. Procedures for detecting gender misassignment are available for array‐based SNP data but are still being developed for genotyping‐by‐sequencing (GBS) data.
T. P. Bilton, A. J. Chappell, S. M. Clarke, R. Brauning, K. G. Dodds, J. C. McEwan, S. J. Rowe   +6 more
openaire   +2 more sources

Trait Analysis in Domestic Rabbits (Oryctolagus cuniculus f. domesticus) Using SNP Markers from Genotyping-by-Sequencing Data

Animals, 2022
The domestic rabbit (Oryctolagus cuniculus f. domesticus) is a very important variety in biomedical research and agricultural animal breeding.
Congyan Li, Yuying Li, Jie Zheng, Zhiqiang Guo, Xiuli Mei, Min Lei, Yongjun Ren, Xiangyu Zhang, Cuixia Zhang, Chao Yang, Li Tang, Yang Ji, Rui Yang, Jifeng Yu, Xiaohong Xie, Liangde Kuang   +15 more
doaj   +1 more source

Detection of Hub QTLs Underlying the Genetic Basis of Three Modules Covering Nine Agronomic Traits in an F₂ Soybean Population

Agronomy, 2022
Deciphering the genetic basis underlying agronomic traits is of importance for soybean improvement. However, covariation, modulated by genetic correlations between complicated traits via hub QTLs, commonly affects the efficiency and accuracy of soybean ...
Mengmeng Fu, Bo Qi, Shuguang Li, Haifeng Xu, Yaqi Wang, Zhixin Zhao, Xiwen Yu, Liyuan Pan, Jiayin Yang   +8 more
doaj   +1 more source

Haplotag: Software for Haplotype-Based Genotyping-by-Sequencing Analysis [PDF]

G3 Genes|Genomes|Genetics, 2015
Abstract Genotyping-by-sequencing (GBS), and related methods, are based on high-throughput short-read sequencing of genomic complexity reductions followed by discovery of single nucleotide polymorphisms (SNPs) within sequence tags. This provides a powerful and economical approach to whole-genome genotyping, facilitating applications ...
Tinker, Nicholas A, Bekele, Wubishet A, Hattori, Jiro   +2 more
openaire   +3 more sources

Applications of genotyping-by-sequencing (GBS) in maize genetics and breeding [PDF]

Scientific Reports, 2020
AbstractGenotyping-by-Sequencing (GBS) is a low-cost, high-throughput genotyping method that relies on restriction enzymes to reduce genome complexity. GBS is being widely used for various genetic and breeding applications. In the present study, 2240 individuals from eight maize populations, including two association populations (AM), backcross first ...
Nan Wang, Yibing Yuan, Hui Wang, Diansi Yu, Yubo Liu, Ao Zhang, Manje Gowda, Sudha K. Nair, Zhuanfang Hao, Yanli Lu, Felix San Vicente, Boddupalli M. Prasanna, Xinhai Li, Xuecai Zhang   +13 more
openaire   +2 more sources