Results 31 to 40 of about 58,106,402 (334)

Special features of RAD Sequencing data:implications for genotyping [PDF]

, 2012
Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop ...
Fuentes-Utrilla, Pablo, Blaxter, Mark L, Pablo Fuentes-utrilla, Karim Gharbi, Davey, John W, Cezard, Timothée, John W. Davey, Gharbi, Karim, Pablo Fuentes‐Utrilla, Cathlene Eland, Timothée Cezard, Mark L. Blaxter, Eland, Cathlene   +12 more
core   +1 more source

Development of High-Density Genetic Maps for Barley and Wheat Using a Novel Two-Enzyme Genotyping-by-Sequencing Approach

PLoS ONE, 2012
Advancements in next-generation sequencing technology have enabled whole genome re-sequencing in many species providing unprecedented discovery and characterization of molecular polymorphisms. There are limitations, however, to next-generation sequencing
J. Poland, P. Brown, M. Sorrells, J. Jannink   +3 more
semanticscholar   +1 more source

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley [PDF]

, 2014
We explored the use of genotyping by sequencing (GBS) on a recombinant inbred line population (GPMx) derived from a cross between the two-rowed barley cultivar 'Golden Promise' (ari-e.GP/Vrs1) and the six-rowed cultivar 'Morex' (Ari-e/vrs1) to map plant ...
Arnis Druka, Jesse Poland, Micha Bayer, Robbie Waugh, Bayer, Micha, Pete E Hedley, Hui Liu, Druka, Arnis, Hackett, Christine A., Luke Ramsay, Ramsay, Luke, Poland, Jesse, Christine A Hackett, Liu, Hui, Hedley, Pete E., Waugh, Robbie; id_orcid, Russell, Joanne R., Joanne R Russell   +17 more
core   +1 more source

Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr (Salvelinus alpinus)

G3: Genes, Genomes, Genetics, 2020
Arctic charr (Salvelinus alpinus) is a species of high economic value for the aquaculture industry, and of high ecological value due to its Holarctic distribution in both marine and freshwater environments.
Christos Palaiokostas, Shannon M. Clarke, Henrik Jeuthe, Rudiger Brauning, Timothy P. Bilton, Ken G. Dodds, John C. McEwan, Dirk-Jan De Koning   +7 more
doaj   +1 more source

A framework for variation discovery and genotyping using next-generation DNA sequencing data

Nature Genetics, 2011
Recent advances in sequencing technology make it possible to comprehensively catalog genetic variation in population samples, creating a foundation for understanding human disease, ancestry and evolution.
M. DePristo, E. Banks, R. Poplin, K. Garimella, J. Maguire, C. Hartl, Anthony A. Philippakis, G. Del Angel, M. Rivas, Matthew G. Hanna, A. McKenna, T. Fennell, A. Kernytsky, A. Sivachenko, K. Cibulskis, S. Gabriel, D. Altshuler, M. Daly   +17 more
semanticscholar   +1 more source

Spontaneous hybridization and introgression between walleye (Sander vitreus) and sauger (Sander canadensis) in two large reservoirs: Insights from genotyping by sequencing

Evolutionary Applications, 2021
Anthropogenic activities may facilitate undesirable hybridization and genomic introgression between fish species. Walleye (Sander vitreus) and sauger (Sander canadensis) are economically valuable freshwater species that can spontaneously hybridize in ...
Carly F. Graham, Rebecca L. Eberts, Una Goncin, Christopher M. Somers   +3 more
doaj   +1 more source

Genetic Diversity and Population Structure of F3:6 Nebraska Winter Wheat Genotypes Using Genotyping-By-Sequencing

Frontiers in Genetics, 2018
The availability of information on the genetic diversity and population structure in wheat (Triticum aestivum L.) breeding lines will help wheat breeders to better use their genetic resources and manage genetic variation in their breeding program.
Shamseldeen Eltaher, A. Sallam, V. Belamkar, H. Emara, A. Nower, K. Salem, J. Poland, P. Baenziger   +7 more
semanticscholar   +1 more source

Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats

G3: Genes, Genomes, Genetics, 2020
The heterogeneous stock (HS) is an outbred rat population derived from eight inbred rat strains. HS rats are ideally suited for genome wide association studies; however, only a few genotyping microarrays have ever been designed for rats and none of them ...
Alexander F. Gileta, Jianjun Gao, Apurva S. Chitre, Hannah V. Bimschleger, Celine L. St. Pierre, Shyam Gopalakrishnan, Abraham A. Palmer   +6 more
doaj   +1 more source

Low genome‐wide divergence between two lizard populations with high adaptive phenotypic differentiation

Ecology and Evolution, 2021
Usually, adaptive phenotypic differentiation is paralleled by genetic divergence between locally adapted populations. However, adaptation can also happen in a scenario of nonsignificant genetic divergence due to intense gene flow and/or recent ...
Alejandro Llanos‐Garrido, Javier Pérez‐Tris, José A. Díaz   +2 more
doaj   +1 more source

Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden

Agronomy, 2019
Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling.
Natalia Cristina Aguirre, Carla Valeria Filippi, Giusi Zaina, Juan Gabriel Rivas, Cintia Vanesa Acuña, Pamela Victoria Villalba, Martín Nahuel García, Sergio González, Máximo Rivarola, María Carolina Martínez, Andrea Fabiana Puebla, Michele Morgante, Horacio Esteban Hopp, Norma Beatriz Paniego, Susana Noemí Marcucci Poltri   +14 more
doaj   +1 more source