Results 11 to 20 of about 55,908,906 (258)

Adapting Genotyping-by-Sequencing for Rice F2 Populations

G3: Genes, Genomes, Genetics, 2017
Rapid and cost-effective genotyping of large mapping populations can be achieved by sequencing a reduced representation of the genome of every individual in a given population, and using that information to generate genetic markers.
Tomoyuki Furuta, Motoyuki Ashikari, Kshirod K. Jena, Kazuyuki Doi, Stefan Reuscher   +4 more
doaj   +3 more sources

Genotyping-by-Sequencing for Plant Breeding and Genetics

The Plant Genome, 2012
Rapid advances in “next-generation” DNA sequencing technology have brought the US$1000 human () genome within reach while providing the raw sequencing output for researchers to revolutionize the way populations are genotyped.
Jesse A. Poland, Trevor W. Rife
doaj   +2 more sources

Genotyping-By-Sequencing applications in biology

, 2017
Genotyping-by-Sequencing (GBS) is a method used to develop rapid and cost-effective high-density genetic marker data for diverse applications in biology.
Shannon Clarke (3504989), Andrew Griffiths (3440687), Timothy Bilton (15394454), Rachael Ashby (15393782), Marty Faville (5072459), John McEwan (45371), Tracey Van Stijn (10380614), Rayna Anderson (3504983), Mingshu Cao (5072465), Suzanne Rowe (5644199), Rudiger Brauning (47247), Ken Dodds (3501542), Rachel Tan (4605598), Jeanne Jacobs (4091890), Alan McCulloch (517237)   +14 more
core   +2 more sources

Genotyping‐by‐sequencing for biogeography

Journal of Biogeography, 2022
AbstractAimGenotyping‐by‐sequencing (GBS) and similar reduced‐representation sequencing methods, such as restriction site‐associated DNA sequencing (RADseq), have been revolutionary for genetic analyses in biogeography. However, navigating the many different methodological and analytical approaches and numerous sources of potential error can be ...
Felix Vaux, Ludovic Dutoit, Ceridwen I. Fraser, Jonathan M. Waters   +3 more
openaire   +1 more source

Parentage assignment with genotyping-by-sequencing data [PDF]

Journal of Animal Breeding and Genetics, 2018
Abstract In this paper we evaluate using genotype-by-sequencing (GBS) data to perform parentage assignment in lieu of traditional array data. The use of GBS data raises two issues: First, for low-coverage GBS data, it may not be possible to call the genotype at many loci, a critical first step for detecting opposing homozygous markers ...
Andrew Whalen, Gregor Gorjanc, John M. Hickey   +2 more
openaire   +3 more sources

Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections

Frontiers in Plant Science, 2023
The Cucurbita genus is home to a number of economically and culturally important species. We present the analysis of genotype data generated through genotyping-by-sequencing of the USDA germplasm collections of Cucurbita pepo, C. moschata, and C. maxima.
Christopher O. Hernandez, Joanne Labate, Kathleen Reitsma, Jack Fabrizio, Kan Bao, Zhangjun Fei, Zhangjun Fei, Rebecca Grumet, Michael Mazourek   +8 more
doaj   +1 more source

GBS-DP: a bioinformatics pipeline for processing data coming from genotyping by sequencing

Вавиловский журнал генетики и селекции, 2023
The development of next-generation sequencing technologies has provided new opportunities for genotyping various organisms, including plants. Genotyping by sequencing (GBS) is used to identify genetic variability more rapidly, and is more cost-effective ...
A. Y. Pronozin, E. A. Salina, D. A. Afonnikov   +2 more
doaj   +1 more source

Developing Methods for Maintaining Genetic Diversity in Novel Aquaculture Species: The Case of Seriola lalandi

Animals, 2023
Developing sound breeding programs for aquaculture species may be challenging when matings cannot be controlled due to communal spawning. We developed a genotyping-by-sequencing marker panel of 300 SNPs for parentage testing and sex determination by ...
Víctor Martinez, Nicolas Galarce, Alvin Setiawan   +2 more
doaj   +1 more source

Genotyping‐by‐sequencing in ecological and conservation genomics [PDF]

Molecular Ecology, 2013
The fields of ecological and conservation genetics have developed greatly in recent decades through the use of molecular markers to investigate organisms in their natural habitat and to evaluate the effect of anthropogenic disturbances. However, many of these studies have been limited to narrow regions of the genome, allowing for limited inferences but
Shawn R, Narum, C Alex, Buerkle, John W, Davey, Michael R, Miller, Paul A, Hohenlohe   +4 more
openaire   +2 more sources

Special features of RAD Sequencing data:implications for genotyping [PDF]

, 2012
Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop ...
Fuentes-Utrilla, Pablo, Blaxter, Mark L, Pablo Fuentes-utrilla, Karim Gharbi, Davey, John W, Cezard, Timothée, John W. Davey, Gharbi, Karim, Pablo Fuentes‐Utrilla, Cathlene Eland, Timothée Cezard, Mark L. Blaxter, Eland, Cathlene   +12 more
core   +1 more source