Results 11 to 20 of about 58,027,105 (302)

Genotyping-by-Sequencing for Plant Breeding and Genetics

The Plant Genome, 2012
Rapid advances in “next-generation” DNA sequencing technology have brought the US$1000 human () genome within reach while providing the raw sequencing output for researchers to revolutionize the way populations are genotyped.
Jesse A. Poland, Trevor W. Rife
doaj   +2 more sources

Methods for Genotyping-by-Sequencing

, 2016
A major goal for biologists is to understand the connection between genes and phenotypic traits, and genetic mapping in experimental populations remains a powerful approach for discovering the causal genes underlying phenotypes. For genetic mapping, the process of genotyping was previously a major rate-limiting step.
Rowan, B., Seymour, D., Chae, E., Lundberg, D., Weigel, D.   +4 more
openaire   +4 more sources

Skim-Based Genotyping by Sequencing

, 2014
Genotyping by sequencing (GBS) is a relatively new method used to determine the differences in the genetic makeup of individuals. Its novelty stems from a combination of two already available methods: genotyping and next-generation sequencing. Depending on the individual study design GBS protocols can take multiple forms, however most share a sequence ...
Golicz, Agnieszka A., Bayer, Philipp E., Edwards, David   +2 more
openaire   +6 more sources

Genotyping-By-Sequencing Applications in Biology

, 2017
Genotyping-by-Sequencing (GBS) is a method used to develop rapid and cost-effective high-density genetic marker data for diverse applications in biology.
Jacobs, Jeanne, Clarke, Shannon, Faville, Marty, Griffiths, Andrew, Mingshu Cao, Tan, Rachel, Stijn, Tracey Van, Anderson, Rayna, Ashby, Rachael, Rowe, Suzanne, Bilton, Timothy, Rudiger Brauning, Mcculloch, Alan, Dodds, Ken, Mcewan, John   +14 more
openaire   +2 more sources

Characterization of the USDA Cucurbita pepo, C. moschata, and C. maxima germplasm collections

Frontiers in Plant Science, 2023
The Cucurbita genus is home to a number of economically and culturally important species. We present the analysis of genotype data generated through genotyping-by-sequencing of the USDA germplasm collections of Cucurbita pepo, C. moschata, and C. maxima.
Christopher O. Hernandez, Joanne Labate, Kathleen Reitsma, Jack Fabrizio, Kan Bao, Zhangjun Fei, Zhangjun Fei, Rebecca Grumet, Michael Mazourek   +8 more
doaj   +1 more source

GBS-DP: a bioinformatics pipeline for processing data coming from genotyping by sequencing

Вавиловский журнал генетики и селекции, 2023
The development of next-generation sequencing technologies has provided new opportunities for genotyping various organisms, including plants. Genotyping by sequencing (GBS) is used to identify genetic variability more rapidly, and is more cost-effective ...
A. Y. Pronozin, E. A. Salina, D. A. Afonnikov   +2 more
doaj   +1 more source

Genotyping‐by‐sequencing for biogeography

Journal of Biogeography, 2022
AbstractAimGenotyping‐by‐sequencing (GBS) and similar reduced‐representation sequencing methods, such as restriction site‐associated DNA sequencing (RADseq), have been revolutionary for genetic analyses in biogeography. However, navigating the many different methodological and analytical approaches and numerous sources of potential error can be ...
Felix Vaux, Ludovic Dutoit, Ceridwen I. Fraser, Jonathan M. Waters   +3 more
openaire   +1 more source

Developing Methods for Maintaining Genetic Diversity in Novel Aquaculture Species: The Case of Seriola lalandi

Animals, 2023
Developing sound breeding programs for aquaculture species may be challenging when matings cannot be controlled due to communal spawning. We developed a genotyping-by-sequencing marker panel of 300 SNPs for parentage testing and sex determination by ...
Víctor Martinez, Nicolas Galarce, Alvin Setiawan   +2 more
doaj   +1 more source

Parentage assignment with genotyping-by-sequencing data [PDF]

Journal of Animal Breeding and Genetics, 2018
Abstract In this paper we evaluate using genotype-by-sequencing (GBS) data to perform parentage assignment in lieu of traditional array data. The use of GBS data raises two issues: First, for low-coverage GBS data, it may not be possible to call the genotype at many loci, a critical first step for detecting opposing homozygous markers ...
Andrew Whalen, Gregor Gorjanc, John M. Hickey   +2 more
openaire   +3 more sources

From typical sequences to typical genotypes [PDF]

Journal of Theoretical Biology, 2016
Abstract We demonstrate an application of a core notion of information theory, that of typical sequences and their related properties, to analysis of population genetic data. Based on the asymptotic equipartition property (AEP) for non-stationary discrete-time sources producing independent symbols, we introduce the ...
Tal, Omri, Tran, Tat Dat, Portegies, Jacobus   +2 more
openaire   +3 more sources