Results 31 to 40 of about 58,027,105 (302)

Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden

Agronomy, 2019
Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling.
Natalia Cristina Aguirre, Carla Valeria Filippi, Giusi Zaina, Juan Gabriel Rivas, Cintia Vanesa Acuña, Pamela Victoria Villalba, Martín Nahuel García, Sergio González, Máximo Rivarola, María Carolina Martínez, Andrea Fabiana Puebla, Michele Morgante, Horacio Esteban Hopp, Norma Beatriz Paniego, Susana Noemí Marcucci Poltri   +14 more
doaj   +1 more source

Discovery and genotyping of novel sequence insertions in many sequenced individuals [PDF]

Bioinformatics, 2017
Abstract Motivation Despite recent advances in algorithms design to characterize structural variation using high-throughput short read sequencing (HTS) data, characterization of novel sequence insertions longer than the average read length remains a challenging task.
Pinar Kavak, Yen-Yi Lin, Ibrahim Numanagic, Hossein Asghari, Tunga Güngör, Can Alkan, Faraz Hach   +6 more
openaire   +5 more sources

A single-nucleotide-polymorphism real-time PCR assay for genotyping of mycobacterium tuberculosis complex in peri-urban Kampala [PDF]

, 2015
Accurate and high-throughput genotyping of Mycobacterium tuberculosis complex (MTBC) may be important for understanding the epidemiology and pathogenesis of tuberculosis (TB).
Eddie M. Wampande, Kathleen Eisenach, Mary Nsereko, Stavroula K. Hatzios, Wampande, Eddie M., Hatzios, Stavroula K., Mayanja, Harriet K., Mupere, Ezekiel, Gagneux, Sebastien, Eisenach, Kathleen, Joloba, Moses L., Moses L. Joloba, Achan, Beatrice, Ezekiel Mupere, Nsereko, Mary, Sebastien Gagneux, Harriet K. Mayanja, null null, Boom, W Henry, Boom, W. Henry, W Henry Boom, Tuberculosis Research Unit,, Beatrice Achan, Mupere E, Nsereko M, Eisenach K, Gagneux S, Boom WH, Wampande EM, Achan B, Mayanja HK, Hatzios SK, Joloba ML   +32 more
core   +2 more sources

Genomic Prediction in Tetraploid Ryegrass Using Allele Frequencies Based on Genotyping by Sequencing

Frontiers in Plant Science, 2018
Perennial ryegrass is an outbreeding forage species and is one of the most widely used forage grasses in temperate regions. The aim of this study was to investigate the possibility of implementing genomic prediction in tetraploid perennial ryegrass, to ...
Xiangyu Guo, Fabio Cericola, Dario Fè, Morten G. Pedersen, Ingo Lenk, Christian S. Jensen, Just Jensen, Lucas L. Janss   +7 more
doaj   +1 more source

tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci [PDF]

Nucleic Acids Research, 2017
Conventional genotyping-by-sequencing (cGBS) strategies suffer from high rates of missing data and genotyping errors, particularly at heterozygous sites. tGBS® genotyping-by-sequencing is a novel method of genome reduction that employs two restriction enzymes to generate overhangs in opposite orientations to which (single-strand) oligos rather than ...
Ott, Alina, Liu, Sanzhen, Schnable, James C., Yeh, Cheng-Ting 'Eddy', Wang, Kai-Sin, Schnable, Patrick S.   +5 more
openaire   +2 more sources

Distribution of genotype network sizes in sequence-to-structure genotype–phenotype maps [PDF]

Journal of The Royal Society Interface, 2017
An essential quantity to ensure evolvability of populations is the navigability of the genotype space. Navigability, understood as the ease with which alternative phenotypes are reached, relies on the existence of sufficiently large and mutually attainable genotype networks. The size of genotype networks (e.g. the number of RNA sequences folding into a
Susanna Manrubia, José A. Cuesta
openaire   +3 more sources

An Integrated Genotyping‐by‐Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes [PDF]

The Plant Genome, 2019
Mining crop genomic variation can facilitate the genetic research of complex traits and molecular breeding. In sorghum [ Sorghum bicolor L. (Moench)], several large‐scale single nucleotide polymorphism (SNP) datasets have been generated using ...
Zhenbin Hu, Marcus O. Olatoye, Sandeep Marla, Geoffrey P. Morris   +3 more
openaire   +3 more sources

cnvCapSeq: detecting copy number variation in long-range targeted resequencing data. [PDF]

, 2014
Targeted resequencing technologies have allowed for efficient and cost-effective detection of genomic variants in specific regions of interest. Although capture sequencing has been primarily used for investigating single nucleotide variants and indels ...
Bellos, Evangelos; https://orcid.org/, Bellos, Evangelos, Kumar, Vikrant, Cheng, C-Y, Cheng, CY, Wong, TYI, Davila, S, Bellos, E, Phua, ZYA, Maggi, Jordi; https://orcid.org/, Lin, C, Phua, Zai Yang, Coin, Lachlan J M, Coin, LJM, Hibberd, ML, Hibberd, Martin L., Wong, TY, Cheng, Ching-Yu, Gemmy Cheung, CM, Cheung, CMIG, Coin, Lachlan JM, Yang Phua, Z, Lin, Clarabelle, Maggi, Jordi, Kumar, V, Cheng, Ching Yu, Maggi, J, Hibberd, Martin L, Coin, Lachlan J.M., Cheung, Chui Ming Gemmy, Davila, Sonia, Wong, Tien Yin, Cheung CM, Kumar V, Davila S, Maggi J, Coin LJ, Cheng CY, Wong TY, Lin C, Hibberd ML, Bellos E, Phua ZY   +42 more
core   +1 more source

Trait Analysis in Domestic Rabbits (Oryctolagus cuniculus f. domesticus) Using SNP Markers from Genotyping-by-Sequencing Data

Animals, 2022
The domestic rabbit (Oryctolagus cuniculus f. domesticus) is a very important variety in biomedical research and agricultural animal breeding.
Congyan Li, Yuying Li, Jie Zheng, Zhiqiang Guo, Xiuli Mei, Min Lei, Yongjun Ren, Xiangyu Zhang, Cuixia Zhang, Chao Yang, Li Tang, Yang Ji, Rui Yang, Jifeng Yu, Xiaohong Xie, Liangde Kuang   +15 more
doaj   +1 more source

Detection of Hub QTLs Underlying the Genetic Basis of Three Modules Covering Nine Agronomic Traits in an F₂ Soybean Population

Agronomy, 2022
Deciphering the genetic basis underlying agronomic traits is of importance for soybean improvement. However, covariation, modulated by genetic correlations between complicated traits via hub QTLs, commonly affects the efficiency and accuracy of soybean ...
Mengmeng Fu, Bo Qi, Shuguang Li, Haifeng Xu, Yaqi Wang, Zhixin Zhao, Xiwen Yu, Liyuan Pan, Jiayin Yang   +8 more
doaj   +1 more source