Results 31 to 40 of about 170,173 (258)
Sequence coverage required for accurate genotyping by sequencing in polyploid species [PDF]
Molecular Ecology Resources, 2021 AbstractPolyploidy plays an important role in the evolution of eukaryotes, especially for flowering plants. Many of ecologically or agronomically important plant or crop species are polyploids, including sycamore maple (tetraploid), the world second and third largest food crops wheat (hexaploid) and potato (tetraploid) as well as economically important
Lin Wang +7 more
openaire +2 more sources
G3: Genes, Genomes, Genetics, 2020 Arctic charr (Salvelinus alpinus) is a species of high economic value for the aquaculture industry, and of high ecological value due to its Holarctic distribution in both marine and freshwater environments.
Christos Palaiokostas +7 more
doaj +1 more source
SNP discovery and genotyping using Genotyping-by-Sequencing in Pekin ducks [PDF]
Scientific Reports, 2016 AbstractGenomic selection and genome-wide association studies need thousands to millions of SNPs. However, many non-model species do not have reference chips for detecting variation. Our goal was to develop and validate an inexpensive but effective method for detecting SNP variation. Genotyping by sequencing (GBS) can be a highly efficient strategy for
Feng Zhu, Qian-Qian Cui, Zhuo-Cheng Hou
openaire +2 more sources
Evolutionary Applications, 2021 Anthropogenic activities may facilitate undesirable hybridization and genomic introgression between fish species. Walleye (Sander vitreus) and sauger (Sander canadensis) are economically valuable freshwater species that can spontaneously hybridize in ...
Carly F. Graham +3 more
doaj +1 more source
Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats
G3: Genes, Genomes, Genetics, 2020 The heterogeneous stock (HS) is an outbred rat population derived from eight inbred rat strains. HS rats are ideally suited for genome wide association studies; however, only a few genotyping microarrays have ever been designed for rats and none of them ...
Alexander F. Gileta +6 more
doaj +1 more source
Ecology and Evolution, 2021 Usually, adaptive phenotypic differentiation is paralleled by genetic divergence between locally adapted populations. However, adaptation can also happen in a scenario of nonsignificant genetic divergence due to intense gene flow and/or recent ...
Alejandro Llanos‐Garrido +2 more
doaj +1 more source
Discovery and genotyping of novel sequence insertions in many sequenced individuals [PDF]
Bioinformatics, 2017 Abstract Motivation Despite recent advances in algorithms design to characterize structural variation using high-throughput short read sequencing (HTS) data, characterization of novel sequence insertions longer than the average read length remains a challenging task.
Pinar Kavak +6 more
openaire +4 more sources
An Integrated Genotyping‐by‐Sequencing Polymorphism Map for Over 10,000 Sorghum Genotypes [PDF]
The Plant Genome, 2019 Mining crop genomic variation can facilitate the genetic research of complex traits and molecular breeding. In sorghum [ Sorghum bicolor L. (Moench)], several large‐scale single nucleotide polymorphism (SNP) datasets have been generated using ...
Zhenbin Hu +3 more
openaire +3 more sources
Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden
Agronomy, 2019 Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling.
Natalia Cristina Aguirre +14 more
doaj +1 more source
tGBS® genotyping-by-sequencing enables reliable genotyping of heterozygous loci [PDF]
Nucleic Acids Research, 2017 Conventional genotyping-by-sequencing (cGBS) strategies suffer from high rates of missing data and genotyping errors, particularly at heterozygous sites. tGBS® genotyping-by-sequencing is a novel method of genome reduction that employs two restriction enzymes to generate overhangs in opposite orientations to which (single-strand) oligos rather than ...
Ott, Alina +5 more
openaire +2 more sources