Results 21 to 30 of about 56,079,681 (305)
An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley [PDF]
, 2014 We explored the use of genotyping by sequencing (GBS) on a recombinant inbred line population (GPMx) derived from a cross between the two-rowed barley cultivar 'Golden Promise' (ari-e.GP/Vrs1) and the six-rowed cultivar 'Morex' (Ari-e/vrs1) to map plant ...
Arnis Druka +17 more
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G3: Genes, Genomes, Genetics, 2020 Arctic charr (Salvelinus alpinus) is a species of high economic value for the aquaculture industry, and of high ecological value due to its Holarctic distribution in both marine and freshwater environments.
Christos Palaiokostas +7 more
doaj +1 more source
SNP discovery and genotyping using Genotyping-by-Sequencing in Pekin ducks [PDF]
Scientific Reports, 2016 AbstractGenomic selection and genome-wide association studies need thousands to millions of SNPs. However, many non-model species do not have reference chips for detecting variation. Our goal was to develop and validate an inexpensive but effective method for detecting SNP variation. Genotyping by sequencing (GBS) can be a highly efficient strategy for
Feng Zhu, Qian-Qian Cui, Zhuo-Cheng Hou
openaire +2 more sources
Evolutionary Applications, 2021 Anthropogenic activities may facilitate undesirable hybridization and genomic introgression between fish species. Walleye (Sander vitreus) and sauger (Sander canadensis) are economically valuable freshwater species that can spontaneously hybridize in ...
Carly F. Graham +3 more
doaj +1 more source
Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats
G3: Genes, Genomes, Genetics, 2020 The heterogeneous stock (HS) is an outbred rat population derived from eight inbred rat strains. HS rats are ideally suited for genome wide association studies; however, only a few genotyping microarrays have ever been designed for rats and none of them ...
Alexander F. Gileta +6 more
doaj +1 more source
Ecology and Evolution, 2021 Usually, adaptive phenotypic differentiation is paralleled by genetic divergence between locally adapted populations. However, adaptation can also happen in a scenario of nonsignificant genetic divergence due to intense gene flow and/or recent ...
Alejandro Llanos‐Garrido +2 more
doaj +1 more source
Genotyping‐by‐sequencing in ecological and conservation genomics [PDF]
Molecular Ecology, 2013 The fields of ecological and conservation genetics have developed greatly in recent decades through the use of molecular markers to investigate organisms in their natural habitat and to evaluate the effect of anthropogenic disturbances. However, many of these studies have been limited to narrow regions of the genome, allowing for limited inferences but
Shawn R, Narum +4 more
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Sequence coverage required for accurate genotyping by sequencing in polyploid species [PDF]
Molecular Ecology Resources, 2021 AbstractPolyploidy plays an important role in the evolution of eukaryotes, especially for flowering plants. Many of ecologically or agronomically important plant or crop species are polyploids, including sycamore maple (tetraploid), the world second and third largest food crops wheat (hexaploid) and potato (tetraploid) as well as economically important
Lin Wang +7 more
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Optimizing ddRADseq in Non-Model Species: A Case Study in Eucalyptus dunnii Maiden
Agronomy, 2019 Restriction site-associated DNA sequencing (RADseq) and its derived protocols, such as double digest RADseq (ddRADseq), offer a flexible and highly cost-effective strategy for efficient plant genome sampling.
Natalia Cristina Aguirre +14 more
doaj +1 more source
Discovery and genotyping of novel sequence insertions in many sequenced individuals [PDF]
Bioinformatics, 2017 Abstract Motivation Despite recent advances in algorithms design to characterize structural variation using high-throughput short read sequencing (HTS) data, characterization of novel sequence insertions longer than the average read length remains a challenging task.
Pinar Kavak +6 more
openaire +5 more sources