Results 21 to 30 of about 58,027,105 (302)

Identification of Candidate Genes for Pigmentation in Camels Using Genotyping-by-Sequencing

Animals, 2022
The coat color of dromedary is usually uniform and varies from black to white, although dark- to light-brown colors are the most common phenotypes. This project was designed to gain knowledge on novel color-related variants using genotyping-by-sequencing
Morteza Bitaraf Sani, Javad Zare Harofte, Mohammad Hossein Banabazi, Asim Faraz, Saeid Esmaeilkhanian, Ali Shafei Naderi, Nader Salim, Abbas Teimoori, Ahmad Bitaraf, Mohammad Zadehrahmani, Pamela Anna Burger, Nader Asadzadeh, Mohammad Silawi, Afsaneh Taghipour Sheshdeh, Behrouz Mohammad Nazari, Mohammad Ali Faghihi, Zahra Roudbari   +16 more
doaj   +1 more source

Special features of RAD Sequencing data:implications for genotyping [PDF]

, 2012
Restriction site-associated DNA Sequencing (RAD-Seq) is an economical and efficient method for SNP discovery and genotyping. As with other sequencing-by-synthesis methods, RAD-Seq produces stochastic count data and requires sensitive analysis to develop ...
Fuentes-Utrilla, Pablo, Blaxter, Mark L, Pablo Fuentes-utrilla, Karim Gharbi, Davey, John W, Cezard, Timothée, John W. Davey, Gharbi, Karim, Pablo Fuentes‐Utrilla, Cathlene Eland, Timothée Cezard, Mark L. Blaxter, Eland, Cathlene   +12 more
core   +1 more source

An evaluation of genotyping by sequencing (GBS) to map the Breviaristatum-e (ari-e) locus in cultivated barley [PDF]

, 2014
We explored the use of genotyping by sequencing (GBS) on a recombinant inbred line population (GPMx) derived from a cross between the two-rowed barley cultivar 'Golden Promise' (ari-e.GP/Vrs1) and the six-rowed cultivar 'Morex' (Ari-e/vrs1) to map plant ...
Arnis Druka, Jesse Poland, Micha Bayer, Robbie Waugh, Bayer, Micha, Pete E Hedley, Hui Liu, Druka, Arnis, Hackett, Christine A., Luke Ramsay, Ramsay, Luke, Poland, Jesse, Christine A Hackett, Liu, Hui, Hedley, Pete E., Waugh, Robbie; id_orcid, Russell, Joanne R., Joanne R Russell   +17 more
core   +1 more source

Application of Low Coverage Genotyping by Sequencing in Selectively Bred Arctic Charr (Salvelinus alpinus)

G3: Genes, Genomes, Genetics, 2020
Arctic charr (Salvelinus alpinus) is a species of high economic value for the aquaculture industry, and of high ecological value due to its Holarctic distribution in both marine and freshwater environments.
Christos Palaiokostas, Shannon M. Clarke, Henrik Jeuthe, Rudiger Brauning, Timothy P. Bilton, Ken G. Dodds, John C. McEwan, Dirk-Jan De Koning   +7 more
doaj   +1 more source

SNP discovery and genotyping using Genotyping-by-Sequencing in Pekin ducks [PDF]

Scientific Reports, 2016
AbstractGenomic selection and genome-wide association studies need thousands to millions of SNPs. However, many non-model species do not have reference chips for detecting variation. Our goal was to develop and validate an inexpensive but effective method for detecting SNP variation. Genotyping by sequencing (GBS) can be a highly efficient strategy for
Feng Zhu, Qian-Qian Cui, Zhuo-Cheng Hou
openaire   +2 more sources

Spontaneous hybridization and introgression between walleye (Sander vitreus) and sauger (Sander canadensis) in two large reservoirs: Insights from genotyping by sequencing

Evolutionary Applications, 2021
Anthropogenic activities may facilitate undesirable hybridization and genomic introgression between fish species. Walleye (Sander vitreus) and sauger (Sander canadensis) are economically valuable freshwater species that can spontaneously hybridize in ...
Carly F. Graham, Rebecca L. Eberts, Una Goncin, Christopher M. Somers   +3 more
doaj   +1 more source

Adapting Genotyping-by-Sequencing and Variant Calling for Heterogeneous Stock Rats

G3: Genes, Genomes, Genetics, 2020
The heterogeneous stock (HS) is an outbred rat population derived from eight inbred rat strains. HS rats are ideally suited for genome wide association studies; however, only a few genotyping microarrays have ever been designed for rats and none of them ...
Alexander F. Gileta, Jianjun Gao, Apurva S. Chitre, Hannah V. Bimschleger, Celine L. St. Pierre, Shyam Gopalakrishnan, Abraham A. Palmer   +6 more
doaj   +1 more source

Low genome‐wide divergence between two lizard populations with high adaptive phenotypic differentiation

Ecology and Evolution, 2021
Usually, adaptive phenotypic differentiation is paralleled by genetic divergence between locally adapted populations. However, adaptation can also happen in a scenario of nonsignificant genetic divergence due to intense gene flow and/or recent ...
Alejandro Llanos‐Garrido, Javier Pérez‐Tris, José A. Díaz   +2 more
doaj   +1 more source

Genotyping‐by‐sequencing in ecological and conservation genomics [PDF]

Molecular Ecology, 2013
The fields of ecological and conservation genetics have developed greatly in recent decades through the use of molecular markers to investigate organisms in their natural habitat and to evaluate the effect of anthropogenic disturbances. However, many of these studies have been limited to narrow regions of the genome, allowing for limited inferences but
Shawn R, Narum, C Alex, Buerkle, John W, Davey, Michael R, Miller, Paul A, Hohenlohe   +4 more
openaire   +2 more sources

Sequence coverage required for accurate genotyping by sequencing in polyploid species [PDF]

Molecular Ecology Resources, 2021
AbstractPolyploidy plays an important role in the evolution of eukaryotes, especially for flowering plants. Many of ecologically or agronomically important plant or crop species are polyploids, including sycamore maple (tetraploid), the world second and third largest food crops wheat (hexaploid) and potato (tetraploid) as well as economically important
Lin Wang, Jixuan Yang, Hong Zhang, Qin Tao, Yuxin Zhang, Zhenyu Dang, Fengjun Zhang, Zewei Luo   +7 more
openaire   +2 more sources