Results 91 to 100 of about 20,056,738 (185)
Supplement_Material_1 Quality control of Hi-C data
, 2022 Quality control of Hi-C ...
Guofeng Meng (6159248)
core +1 more source
, 2022 Dependencies AMReX: release 22.11 openPMD-api: release 0.14.5 What's Changed Fix enforcePeriodic call for AMReX PR 2950 by @atmyers in https://github.com/Hi-PACE/hipace/pull/794 Multigrid smoother by @WeiqunZhang in https://github.com/Hi-PACE/hipace ...
Lehe, Remi +6 more
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Analyses of significant chromatin interactions identified by Fit-Hi-C software.
, 2020 (a) Three representative sub-regions (1 Mb × 1 Mb) from chromosomes 17 and 22 (GM12878 cell line), with significant loci-pairs (cut-off is the 0.5 percentile of q-values) being marked with yellow points in the upper triangle of the heatmaps.
Guifang Du (8479452) +14 more
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, 2020 Capture Hi-C experiments in six mammary cell lines targeting breast cancer susceptibility ...
Juliet French, Jonathan Beesley
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HI-FRIENDS participation in the SKA Data Challenge 2
, 2021 This repository contains the workflow used to find and characterize the HI sources in the data cube of the SKA Data Challenge 2. This is developed by the HI-FRIENDS team.
Darriba, Laura +16 more
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HIFI: estimating DNA-DNA interaction frequency from Hi-C data at restriction-fragment resolution
Genome Biology, 2020 Hi-C is a popular technique to map three-dimensional chromosome conformation. In principle, Hi-C’s resolution is only limited by the size of restriction fragments.
Christopher JF Cameron +2 more
doaj +1 more source
Computational tools for Hi‐C data analysis
Quantitative Biology, 2017 BackgroundIn eukaryotic genome, chromatin is not randomly distributed in cell nuclei, but instead is organized into higher‐order structures. Emerging evidence indicates that these higher‐order chromatin structures play important roles in regulating genome functions such as transcription and DNA replication.
Zhijun Han, Gang Wei
openaire +1 more source
C2c: Predicting Micro-C from Hi-C
Motivation: High-resolution Hi-C data, capable of detecting chromatin features below the level of Topologically Associating Domains (TADs), significantly enhance our understanding of gene regulation. Micro-C, a variant of Hi-C incorporating a micrococcal
Zheng Wang +5 more
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Hi-C data reveals interactions within and among chromosomes.
, 2018 A. Each element of the matrix reflects the frequency of contacts between two genomic windows in an exemplar region of chromosome 3. Repeat density and the locations of AT-rich regions (blue) are plotted below the matrix, as in Fig 2.
Daniel Berry (3482828) +9 more
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Frontiers in Cell and Developmental BiologyIntroductionTriple-negative breast cancer (TNBC) accounts for twelve percent of all breast cancer cases, with a survival rate around ten percent lower than ER+/PR+ positive breast cancers.
Helena Reyes-Gopar +6 more
doaj +1 more source